RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780678|ref|YP_003065091.1| hypothetical protein
CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>d1f2na_ b.121.4.7 (A:) Sobemovirus coat protein {RYMV (Rice yellow
           mottle virus) [TaxId: 31744]}
          Length = 189

 Score = 22.6 bits (48), Expect = 8.9
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 90  PFIFPRLQNIPSGRTQY 106
           PF  PR+ ++    + +
Sbjct: 33  PFNLPRVWSLARCYSMW 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,865
Number of extensions: 15596
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 9
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)