Query gi|254780679|ref|YP_003065092.1| hypothetical protein CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 17:38:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780679.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cnf_A VP1; cytoplasmic polyhe 63.4 7.5 0.00031 18.1 5.1 35 3-37 505-539 (1333)
2 2i6h_A AGR_C_189P, hypothetica 28.5 19 0.00078 15.7 1.4 25 20-44 77-101 (207)
3 2ajj_A NS5A, nonstructural pro 7.2 1E+02 0.0043 11.3 1.1 17 26-42 5-22 (28)
4 2acm_A Mucin-1; auto-catalytic 5.7 1.2E+02 0.0052 10.8 1.3 17 36-52 38-54 (66)
5 2r9r_B Paddle chimera voltage 4.2 1.6E+02 0.0066 10.2 1.6 21 33-53 417-437 (514)
6 3bz1_L Photosystem II reaction 3.9 1.7E+02 0.0071 10.0 3.0 18 6-23 18-35 (37)
7 3dzc_A UDP-N-acetylglucosamine 3.7 1.7E+02 0.0071 10.0 -0.1 30 73-103 311-341 (396)
8 2oxg_Y SOXY protein; immunoglo 3.6 1.8E+02 0.0077 9.8 0.5 9 111-119 65-73 (124)
9 2nnc_A Sulfur covalently-bindi 3.3 2E+02 0.0085 9.5 0.5 9 111-119 67-75 (124)
10 2w50_A ArMet-like protein 1; M 3.3 1.7E+02 0.0073 9.9 -0.3 6 30-35 92-97 (102)
No 1
>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1}
Probab=63.38 E-value=7.5 Score=18.07 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22299999999999999964999999996203401
Q gi|254780679|r 3 YLNWFDLLTIMLLCIIFTCTFKSILHLICSLKYFP 37 (129)
Q Consensus 3 ylnwfdlltimllciiftctfksilhlicslkyfp 37 (129)
|+.-|-+|.++|.||+|--.+.++++.+|++-|+-
T Consensus 505 ~~sIlvlLEvILffI~fP~la~~~~~~l~nvl~~f 539 (1333)
T 3cnf_A 505 PSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLF 539 (1333)
T ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 02399999999999857188998756899999999
No 2
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2, protein structure initiative; 1.75A {Agrobacterium tumefaciens str} SCOP: a.118.8.5
Probab=28.47 E-value=19 Score=15.71 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9649999999962034016799999
Q gi|254780679|r 20 TCTFKSILHLICSLKYFPRNIYKIF 44 (129)
Q Consensus 20 tctfksilhlicslkyfprniykif 44 (129)
..+-.+.|-||--|.-||||||.--
T Consensus 77 ~~~p~g~LAlIILLDQFpRNifRgt 101 (207)
T 2i6h_A 77 LEGAESSLALMLLLDQFPRNCFRGT 101 (207)
T ss_dssp GGSHHHHHHHHHHHTTHHHHHSTTS
T ss_pred HHCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 2283415489988747668886389
No 3
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=7.17 E-value=1e+02 Score=11.30 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=8.9
Q ss_pred HHHHHHHHH-HHHHHHHH
Q ss_conf 999996203-40167999
Q gi|254780679|r 26 ILHLICSLK-YFPRNIYK 42 (129)
Q Consensus 26 ilhlicslk-yfprniyk 42 (129)
||.||+||. -.-|.+-|
T Consensus 5 iLdLiy~lhkqiNr~lkk 22 (28)
T 2ajj_A 5 VLDLIYSLHKQINRGLKK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999888998
No 4
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=5.74 E-value=1.2e+02 Score=10.83 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 01679999999986221
Q gi|254780679|r 36 FPRNIYKIFSNIYQQKH 52 (129)
Q Consensus 36 fprniykifsniyqqkh 52 (129)
.-|||-..|..||.|+.
T Consensus 38 LqRnIS~L~lqiy~~~~ 54 (66)
T 2acm_A 38 LQRDISEMFLQIYKQGG 54 (66)
T ss_dssp HHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99889999999981178
No 5
>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=4.23 E-value=1.6e+02 Score=10.21 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 034016799999999862212
Q gi|254780679|r 33 LKYFPRNIYKIFSNIYQQKHN 53 (129)
Q Consensus 33 lkyfprniykifsniyqqkhn 53 (129)
+-++--.|-..|++.|++...
T Consensus 417 ~aL~IavI~~~F~~~~~~~~e 437 (514)
T 2r9r_B 417 IALPVPVIVSNFNYFYHRETE 437 (514)
T ss_dssp HHTTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 6
>3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* 3kzi_L*
Probab=3.89 E-value=1.7e+02 Score=10.03 Aligned_cols=18 Identities=33% Similarity=0.838 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999649
Q gi|254780679|r 6 WFDLLTIMLLCIIFTCTF 23 (129)
Q Consensus 6 wfdlltimllciiftctf 23 (129)
+..||.|..+.+.|.--|
T Consensus 18 y~GlLlifvlavlfssyf 35 (37)
T 3bz1_L 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999988860
No 7
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae}
Probab=3.66 E-value=1.7e+02 Score=10.02 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=18.5
Q ss_pred CCCCCCEEEECCCCCCCCCCCCHHH-HCCHHH
Q ss_conf 5787210241267854276434042-117011
Q gi|254780679|r 73 KKGNSSQLISTNTNKDKKPRINLRE-KKQPQR 103 (129)
Q Consensus 73 kkgnssqlistntnkdkkprinlre-kkqpqr 103 (129)
--||||-++.- ..-=++|-||+|+ ..||.|
T Consensus 311 vIgnSssg~~E-A~~lg~P~Inir~~ter~e~ 341 (396)
T 3dzc_A 311 ILTDSGGIQEE-APSLGKPVLVMRETTERPEA 341 (396)
T ss_dssp EEESCSGGGTT-GGGGTCCEEECCSSCSCHHH
T ss_pred EECCCHHHHHH-HHHHCCCEEECCCCCCCCCC
T ss_conf 87364557888-98728988965776657102
No 8
>2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y* 2ox5_Y*
Probab=3.59 E-value=1.8e+02 Score=9.80 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q ss_conf 688753224
Q gi|254780679|r 111 KNPIPLASR 119 (129)
Q Consensus 111 knpiplasr 119 (129)
+||+|++..
T Consensus 65 ~NP~P~~a~ 73 (124)
T 2oxg_Y 65 GNPEPAVAT 73 (124)
T ss_dssp TSSSCEEEE
T ss_pred CCCCCEEEE
T ss_conf 899978999
No 9
>2nnc_A Sulfur covalently-binding protein; sulfur binding protein, SOXY, beta sandwich, green sulfur bacterium, ligand binding protein; 2.14A {Chlorobium limicola} PDB: 2nnf_A
Probab=3.31 E-value=2e+02 Score=9.55 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q ss_conf 688753224
Q gi|254780679|r 111 KNPIPLASR 119 (129)
Q Consensus 111 knpiplasr 119 (129)
+||+|++..
T Consensus 67 ~NP~P~~a~ 75 (124)
T 2nnc_A 67 ANFSPMVAS 75 (124)
T ss_dssp TSSSCEEEE
T ss_pred CCCCCEEEE
T ss_conf 899978999
No 10
>2w50_A ArMet-like protein 1; MANF, CDNF, saposin, secreted, ER stress, alternative splicing, hormone, growth factor, neurotrophic factor; 1.60A {Homo sapiens}
Probab=3.31 E-value=1.7e+02 Score=9.95 Aligned_cols=6 Identities=83% Similarity=1.702 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 962034
Q gi|254780679|r 30 ICSLKY 35 (129)
Q Consensus 30 icslky 35 (129)
||.|||
T Consensus 92 ICelkY 97 (102)
T 2w50_A 92 ICELKY 97 (102)
T ss_dssp GGTCCC
T ss_pred HHHHCC
T ss_conf 763114
Done!