RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780679|ref|YP_003065092.1| hypothetical protein
CLIBASIA_02830 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>gnl|CDD|36277 KOG1059, KOG1059, KOG1059, Vesicle coat complex AP-3, delta subunit
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 877

 Score = 28.0 bits (62), Expect = 0.72
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 44  FSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQR 103
           FS+   +K N +   RA   + D+  +  +K    +    N    +K  + +++K + + 
Sbjct: 798 FSDFEDKKGNPSDEERALDIELDLPLSRLEKNLIVKDEKDNLKDTEKVIVIVKKKSKKKN 857

Query: 104 KPITKQKKNPIP 115
           K  TK K  P P
Sbjct: 858 KKKTKAKNVPEP 869


>gnl|CDD|147467 pfam05285, SDA1, SDA1.  This family consists of several SDA1
           protein homologues. SDA1 is a Saccharomyces cerevisiae
           protein which is involved in the control of the actin
           cytoskeleton. The protein is essential for cell
           viability and is localized in the nucleus.
          Length = 317

 Score = 27.3 bits (61), Expect = 1.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 23/56 (41%)

Query: 73  KKGNSSQLISTNTNKDKKPRIN-----------------LREKKQPQRKPITKQKK 111
           K+G S+      TNK+K  + N                 LR+K++  R  I +QKK
Sbjct: 266 KEGKST------TNKEKARKKNFMMTLHKKRVRSKQKRSLRDKQKVLRAHILRQKK 315


>gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 306

 Score = 27.0 bits (61), Expect = 1.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 1   MSYLNWFDLLTIMLLCIIFTCTFKSIL 27
           + YL W   L + L  ++F    K  L
Sbjct: 280 LMYLAWKSFLPLSLNYLLFFFGLKIFL 306


>gnl|CDD|38455 KOG3245, KOG3245, KOG3245, Uncharacterized conserved protein
           [Function unknown].
          Length = 106

 Score = 26.2 bits (57), Expect = 2.4
 Identities = 11/57 (19%), Positives = 19/57 (33%)

Query: 59  RASLQKKDIGATPTKKGNSSQLISTNTNKDKKPRINLREKKQPQRKPITKQKKNPIP 115
                + ++   P +K + SQ       +   P   L E   P    + K+   P P
Sbjct: 17  AWRAARSELLCHPLRKTSKSQGAFQELLRQSLPLPMLPEGDAPHPSHLEKEPLKPWP 73


>gnl|CDD|146621 pfam04086, SRP-alpha_N, Signal recognition particle, alpha
          subunit, N-terminal.  SRP is a complex of six distinct
          polypeptides and a 7S RNA that is essential for
          transferring nascent polypeptide chains that are
          destined for export from the cell to the translocation
          apparatus of the endoplasmic reticulum (ER) membrane.
          SRP binds hydrophobic signal sequences as they emerge
          from the ribosome, and arrests translation.
          Length = 235

 Score = 26.2 bits (58), Expect = 2.5
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 17 IIFTCTFKSILHLICSLKYFPRNIYKIFSNIY 48
          ++F   ++ ILHL    K    +I  IF ++Y
Sbjct: 39 LVFVVVYQKILHLSYIDK-LLDDIRTIFRDLY 69


>gnl|CDD|39135 KOG3932, KOG3932, KOG3932, CDK5 kinase activator p35/Nck5a [Cell
           cycle control, cell division, chromosome partitioning].
          Length = 357

 Score = 26.2 bits (57), Expect = 2.6
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 15/100 (15%)

Query: 43  IFSNIYQQKHNTASFHRASLQKKDIGATPTKKGNSSQLISTNT---------------NK 87
           +  +    K   A   +  L K    +  T   +SS+ +S +T               N 
Sbjct: 53  VLISALNWKRIVAVSAKKKLPKSGSSSEATSSKSSSKKVSPSTSSQYGKISISLDNNQNL 112

Query: 88  DKKPRINLREKKQPQRKPITKQKKNPIPLASRSNPMQNNN 127
              PR +      P    + ++     P  +R +P+ NN 
Sbjct: 113 KSVPRPSPTTTIIPNYYSLREEVPTGPPANTRQDPVNNNL 152


>gnl|CDD|36688 KOG1475, KOG1475, KOG1475, Ribosomal protein RPL1/RPL2/RL4L4 [RNA
           processing and modification].
          Length = 363

 Score = 25.5 bits (55), Expect = 4.4
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 53  NTASFHRASLQKKDIGATPTKKGNSSQLISTNTNKDKKP---------RINLREKKQPQR 103
           N+      S +K  +       G  ++L +    K   P         +   ++KK+ ++
Sbjct: 293 NSDELQAKSDEKGKVAGKKPVVGKKNKLKNKGVLKRLNPYAKKKAAATKKPAKKKKKAEK 352

Query: 104 KPITKQKK 111
           K  TK KK
Sbjct: 353 KKTTKVKK 360


>gnl|CDD|35427 KOG0206, KOG0206, KOG0206, P-type ATPase [General function prediction
            only].
          Length = 1151

 Score = 25.6 bits (56), Expect = 4.6
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 1    MSYLNWFDLLTI---MLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKH 52
             SY  W + + I   +LL  +F   +  +   I +    P   Y +  ++     
Sbjct: 1001 TSYWTWINHIVIWGSILLWFVFLFIYSELTPAIST----PDPFYGVAEHLLSSPS 1051


>gnl|CDD|177081 CHL00177, ccs1, c-type cytochrome biogenensis protein; Validated.
          Length = 426

 Score = 24.6 bits (54), Expect = 8.0
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 18/84 (21%)

Query: 5   NWFDLLTIMLLCIIFTCTFKSILHLICSLKYFPRNIYKIFSNIYQQKHNTASFHRASLQK 64
            WF  L ++    +  CT       + SLK          +  +Q   N   F +  +  
Sbjct: 74  WWFLSLLLLFGLSLLLCTLLQ---QLPSLK---------IARRWQFYTNKNQFKKLQIST 121

Query: 65  KDIGATPTKKGNSSQLISTNTNKD 88
                   KK + S+L     +K+
Sbjct: 122 N------LKKFSLSKLAYKLKSKN 139


>gnl|CDD|145714 pfam02705, K_trans, K+ potassium transporter.  This is a family of
           K+ potassium transporters that are conserved across
           phyla, having both bacterial (KUP), yeast (HAK), and
           plant (AtKT) sequences as members.
          Length = 731

 Score = 24.6 bits (54), Expect = 8.2
 Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 4/25 (16%)

Query: 5   NWFDLLTIMLLCIIFTCTFKSILHL 29
           NW     +M+ CI  T  F+   +L
Sbjct: 371 NWL----LMIGCIAVTAGFRDTSNL 391


>gnl|CDD|38768 KOG3560, KOG3560, KOG3560, Aryl-hydrocarbon receptor
           [Transcription].
          Length = 712

 Score = 24.7 bits (53), Expect = 8.6
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 102 QRKPITKQKKNPIPLASRSNPMQNNNDR 129
           +R+P+ KQ+  P    ++SNP + + DR
Sbjct: 13  RRRPLQKQRP-PPKALTKSNPSKRHRDR 39


>gnl|CDD|35601 KOG0380, KOG0380, KOG0380, Sterol O-acyltransferase/Diacylglycerol
           O-acyltransferase [Lipid transport and metabolism].
          Length = 523

 Score = 24.6 bits (53), Expect = 9.3
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 6   WFDLLTIML-LCIIFTCTFKSILHLICS-----LKYFPRNIYKIFSN 46
              LL +M+   +I+   F  I H   +      ++  R  Y  + N
Sbjct: 349 IERLLKLMIPGILIWLLFFYLIFHCWLNAVAELTRFADREFYGDWWN 395


>gnl|CDD|145540 pfam02453, Reticulon, Reticulon.  Reticulon, also know as
           neuroendocrine-specific protein (NSP), is a protein of
           unknown function which associates with the endoplasmic
           reticulum. This family represents the C-terminal domain
           of the three reticulon isoforms and their homologues.
          Length = 164

 Score = 24.5 bits (54), Expect = 9.4
 Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 1   MSYL-NWFDLLTIMLLCIIF 19
           +SYL + F  LT++ + +I 
Sbjct: 117 LSYLGSLFSFLTLLYIGVIL 136


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,485,390
Number of extensions: 65599
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 25
Length of query: 129
Length of database: 6,263,737
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,470,190
Effective search space: 205628740
Effective search space used: 205628740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)