HHsearch alignment for GI: 254780680 and conserved domain: KOG0555
>KOG0555 consensus.
Probab=95.26 E-value=0.032 Score=37.30 Aligned_cols=102 Identities=28% Similarity=0.389 Sum_probs=67.3
Q ss_pred CCCEEECCHHHHHH----HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC--HHHHHHHHHHHH-CCEECCCCCC
Q ss_conf 75301056488999----9999999986223203202123562027889865514--224767764310-0023134541
Q gi|254780680|r 162 ARFSVLTGHLAHLE----RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI--PKFADDMFCTTD-GRWLIPTSEV 234 (430)
Q Consensus 162 srF~~Lkg~~A~Le----~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l--p~f~~~~y~~~d-~l~Li~TaEv 234 (430)
T Consensus 229 nrHl~iRge~~s~vLK~Ra~~lr~~Rd-~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQSSQLYL----Et 303 (545)
T KOG0555 229 NRHLVIRGENASKVLKARAALLRAMRD-HYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYL----ET 303 (545)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHH-HHHHCCCEECCCCCEEEEEECCCCEEEEECCCCCHHHCCCHHHHHH----HH
T ss_conf 552688410478999999999999998-8874484245797157887517604873113574033022358889----87
Q ss_pred HHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 1454453420595550420885322107884335543432122221020021
Q gi|254780680|r 235 SLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL 286 (430)
Q Consensus 235 pL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~ 286 (430)
T Consensus 304 clpAlg------------dvy~I~~SyRAEkS-r---TRR--HLsEytHVEa 337 (545)
T KOG0555 304 CLPALG------------DVYCIQQSYRAEKS-R---TRR--HLSEYTHVEA 337 (545)
T ss_pred HHHHCC------------CEEEECHHHHHHHH-H---HHH--HHHHHEEEEE
T ss_conf 655207------------62673275665566-6---666--5533111023