HHsearch alignment for GI: 254780680 and conserved domain: PRK00476
>PRK00476 aspS aspartyl-tRNA synthetase; Validated.
Probab=97.20 E-value=0.0009 Score=48.79 Aligned_cols=147 Identities=19% Similarity=0.365 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCCCHHHHC----CCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHH
Q ss_conf 15656656662112202211----73100011222167530105648899999999999862232032021235620278
Q gi|254780680|r 129 GKKPSAIHLSREHFEIGEAL----GLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDE 204 (430)
Q Consensus 129 G~~~~f~f~~k~H~elge~l----~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~ 204 (430)
T Consensus 105 ska~~lP~~~~~~~~~~e~~Rl~~RyLDL-r~-~~~~--------~~fr~Rs~i~~~iR~f-l~~~gFiEVeTPiL~~s~ 173 (587)
T PRK00476 105 NKSKTLPFQIDDETNVSEELRLKYRYLDL-RR-PEMQ--------NNLKLRSKVTSAIRNF-LDDNGFLEIETPILTKST 173 (587)
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHH-CC-HHHH--------HHHHHHHHHHHHHHHH-HHHCCCCEECCCCCCCCC
T ss_conf 76889998865566777888655478887-21-7788--------9999999999999999-997597400475432568
Q ss_pred HHHHHHHC--HHHHHHHHHHHHCCE-ECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 89865514--224767764310002-313454114544534205955504208853221078843355434321222210
Q gi|254780680|r 205 AMYGTGQI--PKFADDMFCTTDGRW-LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF 281 (430)
Q Consensus 205 ~~~gtG~l--p~f~~~~y~~~d~l~-Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF 281 (430)
T Consensus 174 -~eGA~~F~vps---r~~~--~~fyaL-~qSP----QLyk-q~L~vgG~-erVyeig~~FRnE-~~---~t~---r~pEF 233 (587)
T PRK00476 174 -PEGARDYLVPS---RVHP--GKFYAL-PQSP----QLFK-QLLMVAGF-DRYYQIARCFRDE-DL---RAD---RQPEF 233 (587)
T ss_pred -CCCCCCCCCCC---CCCC--CCEECC-CCCH----HHHH-HHHHHCCC-CEEEEECCCCCCC-CC---CCC---CCCHH
T ss_conf -66664430131---0578--855135-6797----9999-99885175-5279964312388-88---766---68234
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2002121278650145789899999999998
Q gi|254780680|r 282 WKCELVSITREEDSFTEHERMLSCAEEILKR 312 (430)
Q Consensus 282 ~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~ 312 (430)
T Consensus 234 t~lE~E~------af~d~~dvm~~~E~li~~ 258 (587)
T PRK00476 234 TQIDIEM------SFVTQEDVMDLMEGLIRH 258 (587)
T ss_pred HEEEHHH------HCCCHHHHHHHHHHHHHH
T ss_conf 2311111------116899999999999999