HHsearch alignment for GI: 254780680 and conserved domain: PRK00488

Probab=97.27  E-value=0.027  Score=37.75  Aligned_cols=185  Identities=18%  Similarity=0.275  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHCCE-ECCCCCCHHHHHHHHHCCCHHHHCC
Q ss_conf             9999986223203202123562027889865514224-----767764310002-3134541145445342059555042
Q gi|254780680|r  179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDGRW-LIPTSEVSLTNLYSHEIIESKSLPL  252 (430)
Q Consensus       179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~l~-Li~TaEvpL~~~~~~~~l~~~~LPi  252 (430)
T Consensus       113 ~~ei~~iF-~~~Gf~v~~GpeiE~~~~NFdaLn~P~~HPAR~~~DTFy~~~~~lLRTHTS~~qir~m~~------~~pp~  185 (338)
T PRK00488        113 IERIEDIF-VGLGFEVAEGPEIEDDYYNFEALNIPKDHPARDMQDTFYIDDRLLLRTHTSPVQIRTMEK------QKPPI  185 (338)
T ss_pred             HHHHHHHH-HHCCCEEECCCCEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCHHHHHHHHH------CCCCE
T ss_conf             99999999-986976961883100454688756997885436466289768713435687888999972------69986


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH-----CCHHHHCCCCCHHC
Q ss_conf             0885322107884335543432122221020021212786501457898999999999984-----10675303780117
Q gi|254780680|r  253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL-----DLHYRVVSLCTGDL  327 (430)
Q Consensus       253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L-----~lpyRvv~~~sgdl  327 (430)
T Consensus       186 ~~i~~GrvyR~d~~Da---tH----~~~FhQ~Egl~vd~-~it---~~~Lk~~l~~f~~~~fg~~~~~R~rpsyFPFtEP  254 (338)
T PRK00488        186 RIIAPGRVYRNDSDDA---TH----SPMFHQVEGLVVDK-NIS---FADLKGTLEDFLKAFFGEDLKIRFRPSYFPFTEP  254 (338)
T ss_pred             EEEECCCCCCCCCCCC---CC----CEEEEEEEEEEEEC-CCC---HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             9995266315899987---53----50466400589717-887---9999999999999972876647754788999998


Q ss_pred             CCHHHEEEEEEEECCC--------CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf             8443402410110100--------483323753102100764532684733899841010420043228999999
Q gi|254780680|r  328 GFSACKTYDLEVWLAG--------QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLI  394 (430)
Q Consensus       328 g~~a~~~~DiE~w~P~--------~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~  394 (430)
T Consensus       255 ----s~Evdi~~~~~~g~gc~~~~~~~WlEi~G~Gmv~p~Vl~~~gi---d~~~-~~G~Af-----G~GieR~aM  316 (338)
T PRK00488        255 ----SAEVDVSCFNCKGKGCRVCKNTGWLEVLGCGMVHPNVLRNVGI---DPEE-YSGFAF-----GMGIERLAM  316 (338)
T ss_pred             ----CEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCC---CCCC-CEEEEE-----EECHHHHHH
T ss_conf             ----5347887314577665447899638973766678899986699---9552-759987-----515889999