HHsearch alignment for GI: 254780680 and conserved domain: PRK02983
>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=95.11 E-value=0.018 Score=39.16 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042
Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430)
Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430)
T Consensus 777 ~~RS~Vi~aiR~~-L~~~GFlEVETPiLq~--~~GGA~ARP-FlThsna~d~~~YL-riAP----ELflKRLmVGG-f-e 845 (1099)
T PRK02983 777 RARSAVLRAVRET-LVAKGFLEVETPILQQ--IHGGANARP-FLTHINAYDLDLYL-RIAP----ELYLKRLCVGG-V-E 845 (1099)
T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCCCCC--CCCCCCCCC-CCCCCCCCCCCCEE-ECCH----HHHHHHHHHCC-C-C
T ss_conf 9999999999999-9878988955754677--888756785-30103367866145-1480----89999998648-6-3
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430)
Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430)
T Consensus 846 RVFEI~RcFRNEg----lrad---HnPEFTmLE~Y------~Ay~Dyedmm~ltEeLi~~~ 893 (1099)
T PRK02983 846 RVFELGRAFRNEG----VDFS---HNPEFTLLEAY------QAHADYLVMRDLCRELIQNA 893 (1099)
T ss_pred CCEEECCCCCCCC----CCCC---CCCCHHHHHHH------HHHCCHHHHHHHHHHHHHHH
T ss_conf 1134325446799----9987---49407999999------98478999999999999999