HHsearch alignment for GI: 254780680 and conserved domain: PRK03772
>PRK03772 threonyl-tRNA synthetase; Validated.
Probab=99.87 E-value=1.3e-21 Score=181.36 Aligned_cols=256 Identities=21% Similarity=0.340 Sum_probs=204.4
Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430)
Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430)
T Consensus 241 kRDHRklGkel~LF~f~~---~-~pG~~fwlP~G~~i~~~le~~~r~~~-~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e 315 (642)
T PRK03772 241 KRDHRKIGKQLDLYHMQE---E-APGMVFWHNDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYAD 315 (642)
T ss_pred HCCHHHHHHHCCCEEECC---C-CCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCHHCCHHHHHHCCHHHHHHC
T ss_conf 658888877522047546---5-88763665858899999999999999-986985985543213778873444766410
Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf 776431---00023134541145445342059555042088532210788433554343212222102002121278650
Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430)
Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430)
T Consensus 316 ~Mf~~~~e~~ey~lKPMNCP~H~~iy~~~~rSYRdLPlR~aEfg~~~R~E~S--G~-L~GL~RVR~FtqdDaHIFC~~dQ 392 (642)
T PRK03772 316 AMFTTSSENREYAIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS--GS-LHGLMRVRGFTQDDAHIFCTEEQ 392 (642)
T ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCC--CC-CCCCCCCCCCCCCCCEEECCHHH
T ss_conf 3422342014430467787348899861664344365455541134316666--55-34745688998788435537899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHHCCCHHHEEEEEEEE--------------------CCCCCCE------
Q ss_conf 1457898999999999984106-753037801178443402410110--------------------1004833------
Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLH-YRVVSLCTGDLGFSACKTYDLEVW--------------------LAGQNLY------ 347 (430)
Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgdlg~~a~~~~DiE~w--------------------~P~~~~y------ 347 (430)
T Consensus 393 i~~Ei~~~l~~~~~vy~~fGf~~~~-~~LStr----pek~~G~~e~W~~AE~~L~~aL~~~g~~y~~~~GegAFYGPKID 467 (642)
T PRK03772 393 IRDEVNSCIKMVYDMYSTFGFEKIV-VKLSTR----PEKRIGSDEMWDRAEADLAVALEENNIPFEYQPGEGAFYGPKIE 467 (642)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEE-EEECCC----CHHCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC
T ss_conf 9999999999999999973986389-996268----22025888899999999999999739970455676344455302
Q ss_pred --------EEEEEECCCCCHH-HHHCCCEEECCCCCCCCEEEE----ECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf --------2375310210076-453268473389984101042----004322899999999883468998386582223
Q gi|254780680|r 348 --------REISSCSTCGNFQ-SRRMNSRYRDPNSKSLKFTHT----LNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430)
Q Consensus 348 --------~Ev~S~Snc~D~Q-srRl~iry~~~~~~~~~~~ht----lNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430)
T Consensus 468 ~~v~DalgR~wq~~TiQlDF~lP~RF~l~Y~~~dg~~-~~PVmIHRAilGS---~ERfiaiLiEh~~G-----~~P~WLa 538 (642)
T PRK03772 468 FTLYDCLDRAWQCGTVQLDFSLPGRLSASYVGEDNER-KVPVMIHRAILGS---MERFIGILTEEYAG-----FFPTWLA 538 (642)
T ss_pred EEEECCCCCEEEECCCEEECCCHHHCCCEEECCCCCC-CCCEEEEECCCCC---HHHHHHHHHHHCCC-----CCCCCCC
T ss_conf 5997078976880232430013544288888789985-7858999246477---89999999998079-----9985647
Q ss_pred C
Q ss_conf 1
Q gi|254780680|r 415 P 415 (430)
Q Consensus 415 p 415 (430)
T Consensus 539 P 539 (642)
T PRK03772 539 P 539 (642)
T ss_pred C
T ss_conf 6