HHsearch alignment for GI: 254780680 and conserved domain: PRK04172
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional.
Probab=96.77 E-value=0.01 Score=40.94 Aligned_cols=188 Identities=19% Similarity=0.282 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC-------------------------
Q ss_conf 9999999986223203202123562027889865514224-----7677643100-------------------------
Q gi|254780680|r 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG------------------------- 225 (430)
Q Consensus 176 ~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~------------------------- 225 (430)
T Consensus 248 ~~~~~~~r~i~~-~mGF~e~~g~~ve~~fwNfdaLf~Pq~HPARd~~Dtf~l~~~~~~~lp~~~~~~Vk~~HE~Gg~~gS 326 (501)
T PRK04172 248 REFIEEVRDILV-EMGFEEVKGPIVETEFWNFDALFQPQDHPAREMQDTFYLKYPSKGELPEELVERVKEVHEHGGDTGS 326 (501)
T ss_pred HHHHHHHHHHHH-HCCCEEEECCCEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999-7897685366101000033430589899855544537865765455737889889998742776788
Q ss_pred -------------CEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf -------------0231345411454453420595550420885322107884335543432122221020021212786
Q gi|254780680|r 226 -------------RWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE 292 (430)
Q Consensus 226 -------------l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p 292 (430)
T Consensus 327 ~Gw~y~w~~~~~~~~~lRthtt~~~~r~l---~~~~~~p~~~f~~~rvfR~e~~d~---tH----~~~F~Q~eg~v~~~- 395 (501)
T PRK04172 327 RGWGYKWDEDIAKRLVLRTHTTALSARYL---AERPEPPGKYFSIGRVFRPETIDA---TH----LPEFYQLEGIVMGE- 395 (501)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCHHHHHHH---HHCCCCCEEEECCCCEEECCCCCC---CC----CCEEEEEEEEEECC-
T ss_conf 77677778556643010436746679999---746899835735650542688886---54----41332224899848-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCC
Q ss_conf 50145789899999999998410675303780117844340241011010048332375310210076453268473389
Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPN 372 (430)
Q Consensus 293 e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~ 372 (430)
T Consensus 396 ---~~~~~~L~g~l~~f~~~~g~~-~~rfrp~-yfPftE-Ps~E~~~~~~~~~-WiE~~g~G~~~pevl~~~g~~~---- 464 (501)
T PRK04172 396 ---DVSFRHLLGILKEFYKRLGFE-EVKFRPA-YFPFTE-PSVEVEVYHPGLG-WVELGGAGIFRPEVTEPLGIDV---- 464 (501)
T ss_pred ---CCCHHHHHHHHHHHHHHHCCC-CEEECCC-CCCCCC-CCEEEEEEECCCC-EEEEECCCCCCHHHHHHCCCCC----
T ss_conf ---887999999999999985886-0786799-899899-8278999957998-6998267578889997559998----
Q ss_pred CCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9841010420043228999999
Q gi|254780680|r 373 SKSLKFTHTLNGSGVAVGRCLI 394 (430)
Q Consensus 373 ~~~~~~~htlNgt~~A~~R~l~ 394 (430)
T Consensus 465 ---~~~a~-----G~g~eR~am 478 (501)
T PRK04172 465 ---PVLAW-----GIGIDRLAM 478 (501)
T ss_pred ---CEEEE-----EECHHHHHH
T ss_conf ---74787-----515999999