HHsearch alignment for GI: 254780680 and conserved domain: PRK04172

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional.
Probab=96.77  E-value=0.01  Score=40.94  Aligned_cols=188  Identities=19%  Similarity=0.282  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC-------------------------
Q ss_conf             9999999986223203202123562027889865514224-----7677643100-------------------------
Q gi|254780680|r  176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG-------------------------  225 (430)
Q Consensus       176 ~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~-------------------------  225 (430)
T Consensus       248 ~~~~~~~r~i~~-~mGF~e~~g~~ve~~fwNfdaLf~Pq~HPARd~~Dtf~l~~~~~~~lp~~~~~~Vk~~HE~Gg~~gS  326 (501)
T PRK04172        248 REFIEEVRDILV-EMGFEEVKGPIVETEFWNFDALFQPQDHPAREMQDTFYLKYPSKGELPEELVERVKEVHEHGGDTGS  326 (501)
T ss_pred             HHHHHHHHHHHH-HCCCEEEECCCEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999-7897685366101000033430589899855544537865765455737889889998742776788


Q ss_pred             -------------CEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             -------------0231345411454453420595550420885322107884335543432122221020021212786
Q gi|254780680|r  226 -------------RWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE  292 (430)
Q Consensus       226 -------------l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p  292 (430)
T Consensus       327 ~Gw~y~w~~~~~~~~~lRthtt~~~~r~l---~~~~~~p~~~f~~~rvfR~e~~d~---tH----~~~F~Q~eg~v~~~-  395 (501)
T PRK04172        327 RGWGYKWDEDIAKRLVLRTHTTALSARYL---AERPEPPGKYFSIGRVFRPETIDA---TH----LPEFYQLEGIVMGE-  395 (501)
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCHHHHHHH---HHCCCCCEEEECCCCEEECCCCCC---CC----CCEEEEEEEEEECC-
T ss_conf             77677778556643010436746679999---746899835735650542688886---54----41332224899848-


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCC
Q ss_conf             50145789899999999998410675303780117844340241011010048332375310210076453268473389
Q gi|254780680|r  293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPN  372 (430)
Q Consensus       293 e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~  372 (430)
T Consensus       396 ---~~~~~~L~g~l~~f~~~~g~~-~~rfrp~-yfPftE-Ps~E~~~~~~~~~-WiE~~g~G~~~pevl~~~g~~~----  464 (501)
T PRK04172        396 ---DVSFRHLLGILKEFYKRLGFE-EVKFRPA-YFPFTE-PSVEVEVYHPGLG-WVELGGAGIFRPEVTEPLGIDV----  464 (501)
T ss_pred             ---CCCHHHHHHHHHHHHHHHCCC-CEEECCC-CCCCCC-CCEEEEEEECCCC-EEEEECCCCCCHHHHHHCCCCC----
T ss_conf             ---887999999999999985886-0786799-899899-8278999957998-6998267578889997559998----


Q ss_pred             CCCCCEEEEECCCHHHHHHHHH
Q ss_conf             9841010420043228999999
Q gi|254780680|r  373 SKSLKFTHTLNGSGVAVGRCLI  394 (430)
Q Consensus       373 ~~~~~~~htlNgt~~A~~R~l~  394 (430)
T Consensus       465 ---~~~a~-----G~g~eR~am  478 (501)
T PRK04172        465 ---PVLAW-----GIGIDRLAM  478 (501)
T ss_pred             ---CEEEE-----EECHHHHHH
T ss_conf             ---74787-----515999999