HHsearch alignment for GI: 254780680 and conserved domain: PRK09350
>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=96.85 E-value=0.0011 Score=48.15 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH----HHHHHCCEECCCCCCHHHHHHHHHCCCHH
Q ss_conf 99999999999862232032021235620278898655142247677----64310002313454114544534205955
Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM----FCTTDGRWLIPTSEVSLTNLYSHEIIESK 248 (430)
Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~----y~~~d~l~Li~TaEvpL~~~~~~~~l~~~ 248 (430)
T Consensus 17 ~~Rs~i~~~iR~f-f~~~gFlEVeTP~L~~~t~-~~~~~~~-f~~~~~~~~~~~~~~~yL~~SPq-----l~~k~l~~~- 87 (325)
T PRK09350 17 LKRAAIIAEIRRF-FADRGVLEVETPAMSQATV-TDIHLVP-FETRFVGPGHSQGKTLWLMTSPE-----YHMKRLLAA- 87 (325)
T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCCC-EEEECCCCCCCCCCCEEEECCHH-----HHHHHHHHC-
T ss_conf 9999999999999-9988968977984257788-7646762-22102565545676645507919-----999999866-
Q ss_pred HHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 50420885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r 249 SLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430)
Q Consensus 249 ~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430)
T Consensus 88 -G~~rvfqI~~~FR~E~-~-~--~---~H~pEFtmlE~~------~~~~d~~d~m~~~e~ll~~~ 138 (325)
T PRK09350 88 -GSGPIFQLCRSFRNEE-A-G--R---YHNPEFTMLEWY------RPHYDMYRLMNEVDDLLQQV 138 (325)
T ss_pred -CCCCEEEEEHHHCCCC-C-C--C---CCCCHHHHHHHH------HHCCCHHHHHHHHHHHHHHH
T ss_conf -7885589611322899-9-8--7---657377888999------81548999999999999999