HHsearch alignment for GI: 254780680 and conserved domain: PRK09350

>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=96.85  E-value=0.0011  Score=48.15  Aligned_cols=118  Identities=17%  Similarity=0.293  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH----HHHHHCCEECCCCCCHHHHHHHHHCCCHH
Q ss_conf             99999999999862232032021235620278898655142247677----64310002313454114544534205955
Q gi|254780680|r  173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM----FCTTDGRWLIPTSEVSLTNLYSHEIIESK  248 (430)
Q Consensus       173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~----y~~~d~l~Li~TaEvpL~~~~~~~~l~~~  248 (430)
T Consensus        17 ~~Rs~i~~~iR~f-f~~~gFlEVeTP~L~~~t~-~~~~~~~-f~~~~~~~~~~~~~~~yL~~SPq-----l~~k~l~~~-   87 (325)
T PRK09350         17 LKRAAIIAEIRRF-FADRGVLEVETPAMSQATV-TDIHLVP-FETRFVGPGHSQGKTLWLMTSPE-----YHMKRLLAA-   87 (325)
T ss_pred             HHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCCC-EEEECCCCCCCCCCCEEEECCHH-----HHHHHHHHC-
T ss_conf             9999999999999-9988968977984257788-7646762-22102565545676645507919-----999999866-


Q ss_pred             HHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             50420885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r  249 SLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL  313 (430)
Q Consensus       249 ~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L  313 (430)
T Consensus        88 -G~~rvfqI~~~FR~E~-~-~--~---~H~pEFtmlE~~------~~~~d~~d~m~~~e~ll~~~  138 (325)
T PRK09350         88 -GSGPIFQLCRSFRNEE-A-G--R---YHNPEFTMLEWY------RPHYDMYRLMNEVDDLLQQV  138 (325)
T ss_pred             -CCCCEEEEEHHHCCCC-C-C--C---CCCCHHHHHHHH------HHCCCHHHHHHHHHHHHHHH
T ss_conf             -7885589611322899-9-8--7---657377888999------81548999999999999999