HHsearch alignment for GI: 254780680 and conserved domain: cd00496
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.23 E-value=0.002 Score=46.20 Aligned_cols=186 Identities=21% Similarity=0.260 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--CEE-CCCCCCHHHHHHHHHCCCHHH
Q ss_conf 99999986223203202123562027889865514224-----7677643100--023-134541145445342059555
Q gi|254780680|r 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--RWL-IPTSEVSLTNLYSHEIIESKS 249 (430)
Q Consensus 178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--l~L-i~TaEvpL~~~~~~~~l~~~~ 249 (430)
T Consensus 6 ~~~~i~~~f-~~~GF~~~~gp~ie~~~~NFD~Ln~P~dHPaR~~~DTfy~~~~~~~lLRtHTS~~q~r~l~~~------~ 78 (218)
T cd00496 6 VIEEIEDIF-VSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQARALAKL------K 78 (218)
T ss_pred HHHHHHHHH-HHCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCHHHHHHHHHC------C
T ss_conf 999999999-877986822895123103045338598875537243278637766021578756679999745------8
Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---HHHHCCCCCHH
Q ss_conf 042088532210788433554343212222102002121278650145789899999999998410---67530378011
Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL---HYRVVSLCTGD 326 (430)
Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l---pyRvv~~~sgd 326 (430)
T Consensus 79 ~p~~~~~~G~VyR~D~iDa---tH----~~~FhQ~Eg~~v~~----~~~~~~Lk~~l~~~~~~lfg~~~~~r~r--p~-y 144 (218)
T cd00496 79 PPIRIFSIGRVYRNDEIDA---TH----LPEFHQIEGLVVDK----GLTFADLKGTLEEFAKELFGPITKVRFR--PS-Y 144 (218)
T ss_pred CCCEEEECCCEEECCCCCC---CC----CCEEEEEEEEEEEC----CCCHHHHHHHHHHHHHHHCCCCCEEEEC--CC-C
T ss_conf 9817994250465388984---31----53125763799956----5119999999999999973876645367--78-8
Q ss_pred CCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 784434024101101004833237531021007645326847338998410104200432289999999
Q gi|254780680|r 327 LGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA 395 (430)
Q Consensus 327 lg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a 395 (430)
T Consensus 145 FPFT-ePS~Evdv~~~~~~~WlEv~G~G~v~p~vL~~~G~---d--~~~~g~Af-----G~GlERlaMl 202 (218)
T cd00496 145 FPFT-EPSFEVDVYCPGCLGWLEILGCGMVRPEVLENAGI---D--EEYSGFAF-----GIGLERLAML 202 (218)
T ss_pred CCCC-CCCEEEEEEECCCCCCEEEECCCCCCHHHHHHCCC---C--CCCEEEEE-----EECHHHHHHH
T ss_conf 9999-98269999965878714885046548899986697---9--99889998-----5258899999