HHsearch alignment for GI: 254780680 and conserved domain: cd00669
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=96.23 E-value=0.0042 Score=43.83 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEE
Q ss_conf 99999999862232032021235620278898655142247677643100023134541145445342059555042088
Q gi|254780680|r 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFT 255 (430)
Q Consensus 176 ~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~ 255 (430)
T Consensus 5 s~i~~~iR~ff-~~~~f~EV~TP~l~~~~~~~~---~~~f~~~~~~~~~~~~L~~Spel~~-----k~ll~~-g~-~~if 73 (269)
T cd00669 5 SKIIKAIRDFM-DDRGFLEVETPMLQKITGGAG---ARPFLVKYNALGLDYYLRISPQLFK-----KRLMVG-GL-DRVF 73 (269)
T ss_pred HHHHHHHHHHH-HHCCCEEEECCEEECCCCCCC---CCEEEEECCCCCCEEEECCCHHHHH-----HHHHHC-CC-CCEE
T ss_conf 99999999999-988989987985305789876---7425731378994077343889999-----999865-88-8679
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 532210788433554343212222102002121
Q gi|254780680|r 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS 288 (430)
Q Consensus 256 ~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~ 288 (430)
T Consensus 74 ~i~~~FR~e-~~-~--~r---H~~EFtmlE~y~ 99 (269)
T cd00669 74 EINRNFRNE-DL-R--AR---HQPEFTMMDLEM 99 (269)
T ss_pred EEECCCCCC-CC-C--CC---CCHHHHHHHHHC
T ss_conf 984621078-98-6--55---434877578751