HHsearch alignment for GI: 254780680 and conserved domain: cd00770
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=0 Score=908.35 Aligned_cols=296 Identities=51% Similarity=0.878 Sum_probs=291.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH
Q ss_conf 40242000156566566621122022117310001122216753010564889999999999986223203202123562
Q gi|254780680|r 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL 200 (430)
Q Consensus 121 dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~l 200 (430)
T Consensus 1 ~n~~v~~~G~~~~f~f~~rdH~~Lg~~L~L~dfe~~akvsG~rf~~l~g~ga~Le~AL~~f~~d~~~-~~Gy~eV~tP~i 79 (297)
T cd00770 1 DNVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLT-KRGFTPVIPPFL 79 (297)
T ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEEECCCC
T ss_conf 9787997548899999988999999977881023224689877799888899999999999999999-879989988530
Q ss_pred CCHHHHHHHHHCHHHHHHHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf 02788986551422476776431-00023134541145445342059555042088532210788433554343212222
Q gi|254780680|r 201 VRDEAMYGTGQIPKFADDMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH 279 (430)
Q Consensus 201 v~~~~~~gtG~lp~f~~~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH 279 (430)
T Consensus 80 v~~~~~~~sG~~~~~~e~~y~i~~~~~~Li~tae~~l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~Rvh 159 (297)
T cd00770 80 VRKEVMEGTGQLPKFDEQLYKVEGEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVH 159 (297)
T ss_pred CHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCCEEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEE
T ss_conf 13899854357876356521035505555440566622344200317755886502246341320377775555457887
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCH
Q ss_conf 10200212127865014578989999999999841067530378011784434024101101004833237531021007
Q gi|254780680|r 280 QFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNF 359 (430)
Q Consensus 280 QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~ 359 (430)
T Consensus 160 qF~kvE~~~~c~pe~s~~~~e~~~~~~e~~l~~L~lpyrvv~~~tgdlg~~a~~~~DiE~W~P~~~~y~EvsS~Snc~Df 239 (297)
T cd00770 160 QFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDF 239 (297)
T ss_pred ECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHEEEEEEEEHHHCCEEEEEECCCCHHH
T ss_conf 21100377616878899999999999999999815501450124655573222207656310541976886131540006
Q ss_pred HHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 6453268473389984101042004322899999999883468998386582223101
Q gi|254780680|r 360 QSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430)
Q Consensus 360 QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430)
T Consensus 240 QarRl~iry~~~~~~~~~~~htlngt~~A~~R~l~allEn~q~~dg~v~iP~~L~~ym 297 (297)
T cd00770 240 QARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 (297)
T ss_pred HHHHCCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
T ss_conf 6652367773489995265488136320888899999972738998786880031319