HHsearch alignment for GI: 254780680 and conserved domain: cd00774

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.42  E-value=6.2e-07  Score=72.28  Aligned_cols=190  Identities=17%  Similarity=0.203  Sum_probs=145.3

Q ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHHHHC-CCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECC-CCCCHHHHH
Q ss_conf             75301056488999999999998622320-3202123562027889865514224767764310002313-454114544
Q gi|254780680|r  162 ARFSVLTGHLAHLERALGQFMIDLHTSEH-GYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIP-TSEVSLTNL  239 (430)
Q Consensus       162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~-Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~-TaEvpL~~~  239 (430)
T Consensus        22 ag~yDyGPlG~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~-LmF~T~iG~~~~-----~~~~~yLRPETAQGifvnF   95 (254)
T cd00774          22 AGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE-LMFKTSIGPVES-----GGNLGYLRPETAQGIFVNF   95 (254)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCEECCCCCCCC-----CCCCEEECHHHHHHHHHHH
T ss_conf             1061548237999999999999998743798799541003663-220012156558-----9860353634534779878


Q ss_pred             HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---H
Q ss_conf             5342059555042088532210788433554343212222102002121278650145789899999999998410---6
Q gi|254780680|r  240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL---H  316 (430)
Q Consensus       240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l---p  316 (430)
T Consensus        96 k~~~~~~r~kLPFGiaQIGk~FRNEIsPr----~~l~R~REF~q~EiE~F~~P~~~~~~~~~w~~~~l~~~~~~~~~~~~  171 (254)
T cd00774          96 KNLLEFNRRKLPFGVAQIGKSFRNEISPR----NGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSPEN  171 (254)
T ss_pred             HHHHHHCCCCCCEEEEEEEECCCCCCCCC----CCCCCHHCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999648888844565420226734777----67540000021257888579864257899999998663873899665


Q ss_pred             HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH
Q ss_conf             75303780117844340241011010048332375310210076453
Q gi|254780680|r  317 YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR  363 (430)
Q Consensus       317 yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR  363 (430)
T Consensus       172 ~~~~~~~a~e~~~~~~~~~~~~~~~~--~g~~e~~Gi~~~~~r~~~~  216 (254)
T cd00774         172 LRLTDHEKEELAHYANETLDYFYAFP--HGFLELEGIANRGDRFLQH  216 (254)
T ss_pred             EEEECCCHHHHCEECCCCEEEEEEHH--HHHHHHHCCCCCCCHHHHC
T ss_conf             36730463674333222178786334--4167861828672578762