HHsearch alignment for GI: 254780680 and conserved domain: cd00774
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.42 E-value=6.2e-07 Score=72.28 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=145.3
Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHC-CCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECC-CCCCHHHHH
Q ss_conf 75301056488999999999998622320-3202123562027889865514224767764310002313-454114544
Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSEH-GYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIP-TSEVSLTNL 239 (430)
Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~-Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~-TaEvpL~~~ 239 (430)
T Consensus 22 ag~yDyGPlG~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~-LmF~T~iG~~~~-----~~~~~yLRPETAQGifvnF 95 (254)
T cd00774 22 AGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE-LMFKTSIGPVES-----GGNLGYLRPETAQGIFVNF 95 (254)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCEECCCCCCCC-----CCCCEEECHHHHHHHHHHH
T ss_conf 1061548237999999999999998743798799541003663-220012156558-----9860353634534779878
Q ss_pred HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---H
Q ss_conf 5342059555042088532210788433554343212222102002121278650145789899999999998410---6
Q gi|254780680|r 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL---H 316 (430)
Q Consensus 240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l---p 316 (430)
T Consensus 96 k~~~~~~r~kLPFGiaQIGk~FRNEIsPr----~~l~R~REF~q~EiE~F~~P~~~~~~~~~w~~~~l~~~~~~~~~~~~ 171 (254)
T cd00774 96 KNLLEFNRRKLPFGVAQIGKSFRNEISPR----NGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSPEN 171 (254)
T ss_pred HHHHHHCCCCCCEEEEEEEECCCCCCCCC----CCCCCHHCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999648888844565420226734777----67540000021257888579864257899999998663873899665
Q ss_pred HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 75303780117844340241011010048332375310210076453
Q gi|254780680|r 317 YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR 363 (430)
Q Consensus 317 yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR 363 (430)
T Consensus 172 ~~~~~~~a~e~~~~~~~~~~~~~~~~--~g~~e~~Gi~~~~~r~~~~ 216 (254)
T cd00774 172 LRLTDHEKEELAHYANETLDYFYAFP--HGFLELEGIANRGDRFLQH 216 (254)
T ss_pred EEEECCCHHHHCEECCCCEEEEEEHH--HHHHHHHCCCCCCCHHHHC
T ss_conf 36730463674333222178786334--4167861828672578762