HHsearch alignment for GI: 254780680 and conserved domain: cd00777
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=96.33 E-value=0.0029 Score=45.02 Aligned_cols=113 Identities=23% Similarity=0.396 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEE
Q ss_conf 99999999986223203202123562027889865514224767764310002313454114544534205955504208
Q gi|254780680|r 175 ERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRF 254 (430)
Q Consensus 175 e~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~ 254 (430)
T Consensus 4 Rs~i~~~iR~f-f~~~gflEV~TPiL~~~~-~ega~~---f~~~~~~~~~~~~~L~~Spe----l~~k~l~~~-g~-~rv 72 (280)
T cd00777 4 RSRVIKAIRNF-LDEQGFVEIETPILTKST-PEGARD---FLVPSRLHPGKFYALPQSPQ----LFKQLLMVS-GF-DRY 72 (280)
T ss_pred HHHHHHHHHHH-HHHCCCEEEECCCCCCCC-CCCCCC---CEECCCCCCCCCCCCCCCHH----HHHHHHHHC-CC-CCC
T ss_conf 99999999999-998898998798106878-776766---44244168876036887989----999999856-87-775
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 853221078843355434321222210200212127865014578989999999999
Q gi|254780680|r 255 TTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILK 311 (430)
Q Consensus 255 ~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~ 311 (430)
T Consensus 73 f~i~~~FR~E~-~---~~~---h~~EFtmLE~e~------~~~~~~d~m~~~E~li~ 116 (280)
T cd00777 73 FQIARCFRDED-L---RAD---RQPEFTQIDIEM------SFVDQEDIMSLIEGLLK 116 (280)
T ss_pred EEEECEECCCC-C---CCC---CCHHHHHHHHHC------CCCCHHHHHHHHHHHHH
T ss_conf 79845174788-8---876---634776234422------68889999999999999