HHsearch alignment for GI: 254780680 and conserved domain: cd00779

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00  E-value=0  Score=363.36  Aligned_cols=245  Identities=22%  Similarity=0.278  Sum_probs=224.1

Q ss_pred             CCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH
Q ss_conf             11220221173100011222167530105648899999999999862232032021235620278898655142247677
Q gi|254780680|r  140 EHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM  219 (430)
Q Consensus       140 ~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~  219 (430)
T Consensus         6 s~-~ll~~ag~i~------~~~~G~~~~lP~G~~i~~~i~~~i~~~-~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~em   77 (255)
T cd00779           6 SH-KLLLRAGFIR------QTSSGLYSWLPLGLRVLKKIENIIREE-MNKIGAQEILMPILQPAELWKESGRWDAYGPEL   77 (255)
T ss_pred             HH-HHHHHCCCCC------CCCCCCEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCE
T ss_conf             79-9998758876------578862788502999999999999999-998599899765347388874425301368731


Q ss_pred             HHHH----HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC-CCCC
Q ss_conf             6431----0002313454114544534205955504208853221078843355434321222210200212127-8650
Q gi|254780680|r  220 FCTT----DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT-REED  294 (430)
Q Consensus       220 y~~~----d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~-~pe~  294 (430)
T Consensus        78 f~v~d~~~~~~~L~PT~E~~~~~~~~~~i~SyrdLPl~~~q~~~~fR~E~r----~~~GllR~rEF~~~d~hsf~~~~e~  153 (255)
T cd00779          78 LRLKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFLMKDAYSFDIDEES  153 (255)
T ss_pred             EEEECCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCEEEECCCCEECCCCC----CCCCCCEEEEEEEEHHHCCCCCHHH
T ss_conf             544537887773168874889999986503612257454135335425667----8866324313770022035699899


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCC
Q ss_conf             14578989999999999841067530378011784434024101101004833237531021007645326847338998
Q gi|254780680|r  295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSK  374 (430)
Q Consensus       295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~  374 (430)
T Consensus       154 a~~~~~~~~~~y~~i~~~Lglp~~~v~~~~g~~g~~~s~ef~~~~~l~~~-~~lEvg~~~~lG~~~s~~~~i~y~d~dg~  232 (255)
T cd00779         154 LEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKIT-KGIEVGHIFQLGTKYSKALGATFLDENGK  232 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC-CEEEEEEEECCCCHHHHHCCCEEECCCCC
T ss_conf             99999999999999999839987998547667788745799998247777-56899745505625578559999999999


Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             4101042004322899999999883
Q gi|254780680|r  375 SLKFTHTLNGSGVAVGRCLIAILEN  399 (430)
Q Consensus       375 ~~~~~htlNgt~~A~~R~l~ailEn  399 (430)
T Consensus       233 -~~~~~m-~s~Gi~i~R~i~AliEq  255 (255)
T cd00779         233 -PKPLEM-GCYGIGVSRLLAAIIEQ  255 (255)
T ss_pred             -EEEEEE-ECCCCHHHHHHHHHCCC
T ss_conf             -884697-06504898888884049