HHsearch alignment for GI: 254780680 and conserved domain: cd00779
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=0 Score=363.36 Aligned_cols=245 Identities=22% Similarity=0.278 Sum_probs=224.1
Q ss_pred CCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH
Q ss_conf 11220221173100011222167530105648899999999999862232032021235620278898655142247677
Q gi|254780680|r 140 EHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM 219 (430)
Q Consensus 140 ~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~ 219 (430)
T Consensus 6 s~-~ll~~ag~i~------~~~~G~~~~lP~G~~i~~~i~~~i~~~-~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~em 77 (255)
T cd00779 6 SH-KLLLRAGFIR------QTSSGLYSWLPLGLRVLKKIENIIREE-MNKIGAQEILMPILQPAELWKESGRWDAYGPEL 77 (255)
T ss_pred HH-HHHHHCCCCC------CCCCCCEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCE
T ss_conf 79-9998758876------578862788502999999999999999-998599899765347388874425301368731
Q ss_pred HHHH----HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC-CCCC
Q ss_conf 6431----0002313454114544534205955504208853221078843355434321222210200212127-8650
Q gi|254780680|r 220 FCTT----DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT-REED 294 (430)
Q Consensus 220 y~~~----d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~-~pe~ 294 (430)
T Consensus 78 f~v~d~~~~~~~L~PT~E~~~~~~~~~~i~SyrdLPl~~~q~~~~fR~E~r----~~~GllR~rEF~~~d~hsf~~~~e~ 153 (255)
T cd00779 78 LRLKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFLMKDAYSFDIDEES 153 (255)
T ss_pred EEEECCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCEEEECCCCEECCCCC----CCCCCCEEEEEEEEHHHCCCCCHHH
T ss_conf 544537887773168874889999986503612257454135335425667----8866324313770022035699899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCC
Q ss_conf 14578989999999999841067530378011784434024101101004833237531021007645326847338998
Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSK 374 (430)
Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~ 374 (430)
T Consensus 154 a~~~~~~~~~~y~~i~~~Lglp~~~v~~~~g~~g~~~s~ef~~~~~l~~~-~~lEvg~~~~lG~~~s~~~~i~y~d~dg~ 232 (255)
T cd00779 154 LEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKIT-KGIEVGHIFQLGTKYSKALGATFLDENGK 232 (255)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC-CEEEEEEEECCCCHHHHHCCCEEECCCCC
T ss_conf 99999999999999999839987998547667788745799998247777-56899745505625578559999999999
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 4101042004322899999999883
Q gi|254780680|r 375 SLKFTHTLNGSGVAVGRCLIAILEN 399 (430)
Q Consensus 375 ~~~~~htlNgt~~A~~R~l~ailEn 399 (430)
T Consensus 233 -~~~~~m-~s~Gi~i~R~i~AliEq 255 (255)
T cd00779 233 -PKPLEM-GCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred -EEEEEE-ECCCCHHHHHHHHHCCC
T ss_conf -884697-06504898888884049