HHsearch alignment for GI: 254780680 and conserved domain: pfam00152
>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=95.20 E-value=0.022 Score=38.41 Aligned_cols=117 Identities=22% Similarity=0.402 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042
Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430)
Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430)
T Consensus 23 ~~Rs~i~~~iR~f-f~~~~f~EV~TP~L~~~~~-e~~a~--~F~~~~~~-~~~~yL~~Spe-----l~~k~ll~~g--~~ 90 (341)
T pfam00152 23 KLRSKIIRAIREF-LDERGFLEVETPILTKSTP-EGGAR--DFLVPKFY-AKEAYLPQSPQ-----LYKQLLMVAG--FD 90 (341)
T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCC--EEEECCCC-CCCEEECCCHH-----HHHHHHHHCC--CC
T ss_conf 9999999999999-9988989987982005589-87776--64502678-98234054889-----9999998658--87
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430)
Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430)
T Consensus 91 rVfei~~~FR~E~-~~t~--r---H~~EFtmlE~y~a------~~d~~d~m~~~E~li~~i 139 (341)
T pfam00152 91 RVFQIAPCFRDED-LRTD--R---HPPEFTQLDLEMS------FVDYEDVMDLTEDLIKYV 139 (341)
T ss_pred CCEEEECHHCCCC-CCCC--C---CCHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_conf 6379723202798-9886--5---5077887767553------599999999999999999