HHsearch alignment for GI: 254780680 and conserved domain: pfam01409

>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=97.37  E-value=0.0013  Score=47.52  Aligned_cols=188  Identities=19%  Similarity=0.260  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHH----CCEEC--CCCCCHHHHHHHHHCCCH
Q ss_conf             9999986223203202123562027889865514224-----767764310----00231--345411454453420595
Q gi|254780680|r  179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTD----GRWLI--PTSEVSLTNLYSHEIIES  247 (430)
Q Consensus       179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d----~l~Li--~TaEvpL~~~~~~~~l~~  247 (430)
T Consensus        23 ~~~i~~~f-~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~~~~~~~~vLRtHTS~~q~r~l~-----~~   96 (243)
T pfam01409        23 LEEIRDIF-LSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKKPLKARRLLLRTHTTPVQARTLA-----EK   96 (243)
T ss_pred             HHHHHHHH-HHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHHHHH-----HC
T ss_conf             99999999-8779868769835642777775578988987676760343366667686576879889999997-----42


Q ss_pred             HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCHHHHCCCCCHH
Q ss_conf             550420885322107884335543432122221020021212786501457898999999999984-1067530378011
Q gi|254780680|r  248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL-DLHYRVVSLCTGD  326 (430)
Q Consensus       248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L-~lpyRvv~~~sgd  326 (430)
T Consensus        97 ~~~p~r~~~~grvyR~d~~Da---tH----~~~FhQ~Eg~vvd~----~it~~~Lk~~l~~~~~~lfg~~~~~R~rp~-y  164 (243)
T pfam01409        97 NKPPIKIFSIGRVFRRDQVDA---TH----LPEFHQVEGLVVDE----NVSFADLKGVLEEFLRKFFGFEVKVRFRPS-Y  164 (243)
T ss_pred             CCCCEEEECCCEEEECCCCCC---CC----CCEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEEECCC-C
T ss_conf             799848981431332588984---31----53105755789657----778999999999999997399737986788-6


Q ss_pred             CCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf             784434024101101004833237531021007645326847338998410104200432289999999
Q gi|254780680|r  327 LGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA  395 (430)
Q Consensus       327 lg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a  395 (430)
T Consensus       165 FPFTe-PS~Evdv~~~~~~~WlEi~G~Gmv~p~vl~~~gid-----~~~~g~Af-----G~GlERlaMl  222 (243)
T pfam01409       165 FPFTE-PSAEVDVYCCKGGGWIEIGGAGMVHPNVLEAVGID-----EDYPGFAF-----GLGVERLAML  222 (243)
T ss_pred             CCCCC-CCCEEEEEEECCCCEEEEEECCCCCHHHHHHCCCC-----CCCEEEEE-----EECHHHHHHH
T ss_conf             99999-86179999964997258750366678899866989-----89769998-----5348899999