HHsearch results for GI: 254780680 and protein with PDBid: 1ati_A
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=98.83 E-value=4e-09 Score=86.93 Aligned_cols=269 Identities=16% Similarity=0.123 Sum_probs=171.0
Q ss_pred HHHHCCCCCHHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHH-HHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH
Q ss_conf 022117310001122216--7530105648899999999999862-2320320212356202788986551422476776
Q gi|254780680|r 144 IGEALGLMDFDRATKLSG--ARFSVLTGHLAHLERALGQFMIDLH-TSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF 220 (430)
Q Consensus 144 lge~l~liDfe~a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~-~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y 220 (430)
|..+-|.+ -.++++-| ||+|-+---|.++-+-+.+.--..+ ....|+.+|..|.+...+++..+|++..|.|.|+
T Consensus 11 l~~r~Gfi--~~~~e~~~~~sGiy~~LPlG~rvl~KIe~iiR~em~~~~~~~~ev~~p~i~p~eLWk~SGr~e~~~d~m~ 88 (505)
T 1ati_A 11 LCKRRGFI--FQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMV 88 (505)
T ss_dssp HHHHTTSE--EETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEE
T ss_pred HHHHCCCE--ECCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCCCHHH
T ss_conf 99737875--1461003770379755810899999999999999874459858987344589889975799420371166
Q ss_pred ---HHH----HCCEECCCCCCHHHH-------------------------------------------------------
Q ss_conf ---431----000231345411454-------------------------------------------------------
Q gi|254780680|r 221 ---CTT----DGRWLIPTSEVSLTN------------------------------------------------------- 238 (430)
Q Consensus 221 ---~~~----d~l~Li~TaEvpL~~------------------------------------------------------- 238 (430)
... ++.+|-||.|--++.
T Consensus 89 ~~~~~~dr~~~~~~l~~t~eE~i~kd~~s~~~~~~~~~~~y~~~~~ay~~i~~~~~~~~i~~~~sg~~~~~~~~~~~~~~ 168 (505)
T 1ati_A 89 DNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMM 168 (505)
T ss_dssp EC--------------------------------------------------------------------CCCCEEEECB
T ss_pred HCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 53424301052010331145555544333343255489999999873999999988607657765776786641000012
Q ss_pred ----------------------------HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf ----------------------------4534205955504208853221078843355434321222210200212127
Q gi|254780680|r 239 ----------------------------LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT 290 (430)
Q Consensus 239 ----------------------------~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~ 290 (430)
+..........+|..+...+.+||-|.. ...|+.|+.+|...+...++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~r~e~~----~~~~~~r~r~~~~~~~~~~~ 244 (505)
T 1ati_A 169 FQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT----PRNFIFRVREFEQMEIEYFV 244 (505)
T ss_dssp EEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS----CCTGGGSCSEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC----CCCCEEEEEEHHHCCEEEEE
T ss_conf 44443321244312223520011023334543121002576100245321125234----32023554300013124550
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC-HHHHCC--CCCHHCCCHHHEEEEEEEECCCCCCEEEEEEE--------------
Q ss_conf 8650145789899999999998410-675303--78011784434024101101004833237531--------------
Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLDL-HYRVVS--LCTGDLGFSACKTYDLEVWLAGQNLYREISSC-------------- 353 (430)
Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~l-pyRvv~--~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~-------------- 353 (430)
.+++....+.......-..+...++ |+.+.. ....++...+...++.+.=.+ -.+-+...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 322 (505)
T 1ati_A 245 RPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFP--HGSLELEGIAQRTDFDLGSHTKD 322 (505)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEET--TEEEEEEEEEECTTHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC--CCCCCCEECCCCCCCCCCCCCCC
T ss_conf 5214568999999999999875136652378864124222567887777750798--55220401145686454664324
Q ss_pred --------CCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC-------C-CCCCEECCCCCCCCC
Q ss_conf --------021007645326847338998410104200432289999999988346-------8-998386582223101
Q gi|254780680|r 354 --------STCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYL-------N-ADGSVTIPTVLRPYM 417 (430)
Q Consensus 354 --------Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q-------~-~dg~i~iP~~L~pym 417 (430)
-..+.--|..++..|.+.+|++ ..+|+ ...+.-+.|+++|++|.+- . .+..++.|..+-||=
T Consensus 323 ~~~~~~~~~~lg~kys~~~~~~~~~~~gk~-~~~~m-g~ygigv~r~~~a~ie~~~~~~~~~~~~d~~gi~wP~~IAPfq 400 (505)
T 1ati_A 323 QEALGITARVLRNEHSTQRLAYRDPETGKW-FVPYV-IEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK 400 (505)
T ss_dssp TTTTTCCSCCCCCSCCCSCCCEECSSSCCE-ECCEE-EEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCEE-ECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEE
T ss_conf 650036689836523441224451777989-48768-8988665404999998763033303531001035995718736
Q ss_pred CCEEEEC
Q ss_conf 8801307
Q gi|254780680|r 418 NNLAVIK 424 (430)
Q Consensus 418 ~g~~~i~ 424 (430)
..+|+
T Consensus 401 --V~Iip 405 (505)
T 1ati_A 401 --VAVIP 405 (505)
T ss_dssp --EEEEE
T ss_pred --EEEEE
T ss_conf --99996