HHsearch results for GI: 254780680 and protein with PDBid: 1ati_A

>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=98.83  E-value=4e-09  Score=86.93  Aligned_cols=269  Identities=16%  Similarity=0.123  Sum_probs=171.0

Q ss_pred             HHHHCCCCCHHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHH-HHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH
Q ss_conf             022117310001122216--7530105648899999999999862-2320320212356202788986551422476776
Q gi|254780680|r  144 IGEALGLMDFDRATKLSG--ARFSVLTGHLAHLERALGQFMIDLH-TSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF  220 (430)
Q Consensus       144 lge~l~liDfe~a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~-~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y  220 (430)
                      |..+-|.+  -.++++-|  ||+|-+---|.++-+-+.+.--..+ ....|+.+|..|.+...+++..+|++..|.|.|+
T Consensus        11 l~~r~Gfi--~~~~e~~~~~sGiy~~LPlG~rvl~KIe~iiR~em~~~~~~~~ev~~p~i~p~eLWk~SGr~e~~~d~m~   88 (505)
T 1ati_A           11 LCKRRGFI--FQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMV   88 (505)
T ss_dssp             HHHHTTSE--EETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEE
T ss_pred             HHHHCCCE--ECCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCCCHHH
T ss_conf             99737875--1461003770379755810899999999999999874459858987344589889975799420371166


Q ss_pred             ---HHH----HCCEECCCCCCHHHH-------------------------------------------------------
Q ss_conf             ---431----000231345411454-------------------------------------------------------
Q gi|254780680|r  221 ---CTT----DGRWLIPTSEVSLTN-------------------------------------------------------  238 (430)
Q Consensus       221 ---~~~----d~l~Li~TaEvpL~~-------------------------------------------------------  238 (430)
                         ...    ++.+|-||.|--++.                                                       
T Consensus        89 ~~~~~~dr~~~~~~l~~t~eE~i~kd~~s~~~~~~~~~~~y~~~~~ay~~i~~~~~~~~i~~~~sg~~~~~~~~~~~~~~  168 (505)
T 1ati_A           89 DNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMM  168 (505)
T ss_dssp             EC--------------------------------------------------------------------CCCCEEEECB
T ss_pred             HCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             53424301052010331145555544333343255489999999873999999988607657765776786641000012


Q ss_pred             ----------------------------HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             ----------------------------4534205955504208853221078843355434321222210200212127
Q gi|254780680|r  239 ----------------------------LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT  290 (430)
Q Consensus       239 ----------------------------~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~  290 (430)
                                                  +..........+|..+...+.+||-|..    ...|+.|+.+|...+...++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~r~e~~----~~~~~~r~r~~~~~~~~~~~  244 (505)
T 1ati_A          169 FQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT----PRNFIFRVREFEQMEIEYFV  244 (505)
T ss_dssp             EEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS----CCTGGGSCSEEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC----CCCCEEEEEEHHHCCEEEEE
T ss_conf             44443321244312223520011023334543121002576100245321125234----32023554300013124550


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCC-HHHHCC--CCCHHCCCHHHEEEEEEEECCCCCCEEEEEEE--------------
Q ss_conf             8650145789899999999998410-675303--78011784434024101101004833237531--------------
Q gi|254780680|r  291 REEDSFTEHERMLSCAEEILKRLDL-HYRVVS--LCTGDLGFSACKTYDLEVWLAGQNLYREISSC--------------  353 (430)
Q Consensus       291 ~pe~S~~~~e~~~~~~~~i~~~L~l-pyRvv~--~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~--------------  353 (430)
                      .+++....+.......-..+...++ |+.+..  ....++...+...++.+.=.+  -.+-+...+              
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  322 (505)
T 1ati_A          245 RPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFP--HGSLELEGIAQRTDFDLGSHTKD  322 (505)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEET--TEEEEEEEEEECTTHHHHHHCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC--CCCCCCEECCCCCCCCCCCCCCC
T ss_conf             5214568999999999999875136652378864124222567887777750798--55220401145686454664324


Q ss_pred             --------CCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC-------C-CCCCEECCCCCCCCC
Q ss_conf             --------021007645326847338998410104200432289999999988346-------8-998386582223101
Q gi|254780680|r  354 --------STCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYL-------N-ADGSVTIPTVLRPYM  417 (430)
Q Consensus       354 --------Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q-------~-~dg~i~iP~~L~pym  417 (430)
                              -..+.--|..++..|.+.+|++ ..+|+ ...+.-+.|+++|++|.+-       . .+..++.|..+-||=
T Consensus       323 ~~~~~~~~~~lg~kys~~~~~~~~~~~gk~-~~~~m-g~ygigv~r~~~a~ie~~~~~~~~~~~~d~~gi~wP~~IAPfq  400 (505)
T 1ati_A          323 QEALGITARVLRNEHSTQRLAYRDPETGKW-FVPYV-IEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK  400 (505)
T ss_dssp             TTTTTCCSCCCCCSCCCSCCCEECSSSCCE-ECCEE-EEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCEE-ECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEE
T ss_conf             650036689836523441224451777989-48768-8988665404999998763033303531001035995718736


Q ss_pred             CCEEEEC
Q ss_conf             8801307
Q gi|254780680|r  418 NNLAVIK  424 (430)
Q Consensus       418 ~g~~~i~  424 (430)
                        ..+|+
T Consensus       401 --V~Iip  405 (505)
T 1ati_A          401 --VAVIP  405 (505)
T ss_dssp             --EEEEE
T ss_pred             --EEEEE
T ss_conf             --99996