HHsearch results for GI: 254780680 and protein with PDBid: 1c0a_A

>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=95.49  E-value=0.0095  Score=39.56  Aligned_cols=120  Identities=14%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH
Q ss_conf             48899999999999862232032021235620278898655142247677643100023134541145445342059555
Q gi|254780680|r  170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS  249 (430)
Q Consensus       170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~  249 (430)
                      ...++--++++.+-++ +.++||++|.||.|.... -+|.|.+  |.-..+.-+..+||.-..|..+     .. +--..
T Consensus       136 ~~~r~Rs~i~~~~r~~-l~~~gF~EV~TP~L~~~~-~ega~~~--f~~~~~~~~~~~~L~~Spqly~-----q~-l~~~g  205 (585)
T 1c0a_A          136 QRLKTRAKITSLVRRF-MDDHGFLDIETPMLTKAT-PEGARDY--LVPSRVHKGKFYALPQSPQLFK-----QL-LMMSG  205 (585)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHTTCEECCCCSSBCCC-SSSSCCC--EEECSSSTTCEEECCSCSHHHH-----HH-HHHTT
T ss_pred             HHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCC-CCCCCCC--EEEEECCCCCCCCCCCCCHHHH-----HH-HHHHC
T ss_conf             9999999999999999-987899899898546778-7656675--5425548775102787835888-----98-88606


Q ss_pred             HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             0420885322107884335543432122221020021212786501457898999999999984
Q gi|254780680|r  250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL  313 (430)
Q Consensus       250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L  313 (430)
                      + =|+..++||||.|-.    +|+   |.-.|+-+|+..      |+.-++++....|+++..+
T Consensus       206 ~-~rVfeig~~FR~E~~----~t~---r~pEFt~le~e~------a~~~~~d~m~~~E~l~~~i  255 (585)
T 1c0a_A          206 F-DRYYQIVKCFRDEDL----RAD---RQPEFTQIDVET------SFMTAPQVREVMEALVRHL  255 (585)
T ss_dssp             C-CEEEEEEEEECCCCC----BTT---BCSEEEEEEEEE------ESCCHHHHHHHHHHHHHHH
T ss_pred             C-CEEEEECCCCCCCCC----CCC---CCCCCCEEHHHH------HHHHHHHHHHHHHHHHHHH
T ss_conf             6-616896442126888----886---686431008988------7766778999998999999