HHsearch results for GI: 254780680 and protein with PDBid: 1g5h_A
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=98.68 E-value=1.1e-07 Score=76.32 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=128.4
Q ss_pred HCCEECC-CCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 0002313-45411454453420595550420885322107884-335543432122221020021212786501457898
Q gi|254780680|r 224 DGRWLIP-TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA-GSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHER 301 (430)
Q Consensus 224 d~l~Li~-TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~Ea-Gs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~ 301 (430)
..-||=| ||.--++++..-......+||++++-++.+||-|. |. .--.||+|+.+|+.-|+-.||+|+++.+++..
T Consensus 135 ~~~yLRPETaQgifvnF~n~~~~s~kkLPfgiaQIGk~FR~E~nEi--~PR~GL~R~REF~q~D~e~F~~pe~~~~~~~~ 212 (454)
T 1g5h_A 135 TSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSN--QTPSSVTRVGEKTEASLVWFTPTRTSSQWLDF 212 (454)
T ss_dssp HSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEEEECHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCC--CCCCCCCHHHHEEHHCEEEEECCCHHHHHHHH
T ss_conf 4542373010579999999998426788855555302224776776--68767760213311027668774255899999
Q ss_pred HHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE----ECCCCCCCC
Q ss_conf 9999999999841067530378011784434024101101004833237531021007645326847----338998410
Q gi|254780680|r 302 MLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY----RDPNSKSLK 377 (430)
Q Consensus 302 ~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry----~~~~~~~~~ 377 (430)
++.....+|..||++.-.+.....+ ..-+....|++.=+| -.|.|+..+.+.+||.-..-.... .+..+.. .
T Consensus 213 ~~~~~~~~~~~lGi~~~~~r~~~~~-~~~~~~~~d~~~~~~--~g~~E~~g~~~r~~~dl~~~~~~~~~~~~~~~~~~-~ 288 (454)
T 1g5h_A 213 WLRHRLLWWRKFAMSPSNFSSADCQ-DELGRKGSKLYYSFP--WGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRK-N 288 (454)
T ss_dssp HHHHHHHHHHTTCSSGGGEEEEEEE-CTTSCEEEEEEEEET--TEEEEEEEEEEEESHHHHHHSTTCGGGSCEEETTE-E
T ss_pred HHHHHHHHHHHHCCCHHHHEECCCC-CCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCC-C
T ss_conf 9999999999848885572121342-001432366766546--55898888756865100000002221111332113-3
Q ss_pred EEEEECCCHHHHHHHHHHHHH-HCCCCCC-----------CEECCCCCCCC
Q ss_conf 104200432289999999988-3468998-----------38658222310
Q gi|254780680|r 378 FTHTLNGSGVAVGRCLIAILE-NYLNADG-----------SVTIPTVLRPY 416 (430)
Q Consensus 378 ~~htlNgt~~A~~R~l~ailE-n~q~~dg-----------~i~iP~~L~py 416 (430)
+......+..-+.|.+.+++. .|..+++ ..++|..|-||
T Consensus 289 ~~p~v~e~s~~~d~~~~~~l~~~y~~~~~~~~~~~~~~R~vlklp~~lAP~ 339 (454)
T 1g5h_A 289 VVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPI 339 (454)
T ss_dssp ECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSC
T ss_pred CCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 353473243355520014454202345343335666203565337655873