HHsearch results for GI: 254780680 and protein with PDBid: 1nj8_A
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.92 E-value=4.6e-24 Score=197.96 Aligned_cols=264 Identities=17% Similarity=0.240 Sum_probs=230.4
Q ss_pred CCC--CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH-HCHHHH
Q ss_conf 112--20221173100011222167530105648899999999999862232032021235620278898655-142247
Q gi|254780680|r 140 EHF--EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG-QIPKFA 216 (430)
Q Consensus 140 ~H~--elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG-~lp~f~ 216 (430)
+.| +|.++-+|+|+...+ +|++++.-.|+++-+.+.+++-+. ..+.||.+|.+|.+++.+.+..+| ++..|.
T Consensus 8 ~~wy~~~~~~a~l~~~~~~v----kG~~~~lP~G~~i~~~ie~~~r~~-~~~~G~~ei~tP~l~~~~l~~k~~~h~d~f~ 82 (459)
T 1nj8_A 8 SEWYSDILEKAEIYDVRYPI----KGCGVYLPYGFKIRRYTFEIIRNL-LDESGHDEALFPMLIPEDLLAKEAEHIKGFE 82 (459)
T ss_dssp HHHHHHHHHHTSSCBCCSTT----SSCCBBCHHHHHHHHHHHHHHHHH-HHHTTCEECBCCSEEEHHHHHHHCSSSGGGG
T ss_pred HHHHHHHHHHCCCCCCCCCC----CCCEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 78899999975981058999----971788845999999999999999-9985998998985378899987416724137
Q ss_pred HHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEE
Q ss_conf 6776431--------000231345411454453420595550420885322107884335543432122221020--021
Q gi|254780680|r 217 DDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CEL 286 (430)
Q Consensus 217 ~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~ 286 (430)
++||.+. +.+.|-||+|.+++.+|.+.+..+.+||+|+.-+++|||.|.. .++|++|+.||.. ++-
T Consensus 83 ~Em~~v~~~g~~~~~~~~~LrPt~e~~~~~~~~~~~~s~rdLPlrl~q~g~~fR~E~~----~~~~~lR~rEF~q~~~~h 158 (459)
T 1nj8_A 83 DEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK----HTRPLIRLREIMTFKEAH 158 (459)
T ss_dssp GGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS----CCBTTTBCSBCSCEEEEE
T ss_pred CCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCC----CCCCCEEEEEEEEECEEE
T ss_conf 4637883278655576231117996899999986513225567189850412555332----356676999997512367
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC
Q ss_conf 21278650145789899999999998410675303780117844340241011010048332375310210076453268
Q gi|254780680|r 287 VSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS 366 (430)
Q Consensus 287 ~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i 366 (430)
+..+++++..+....|++....++..+.+||.+..-+..+....+..+++++.++|.. .-.++.++.+.++..+++.+|
T Consensus 159 ~~~~~~~e~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g-~~~q~~t~~~lg~~~~~~~~i 237 (459)
T 1nj8_A 159 TAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDG-RTMQIATVHNLGQNFSKTFEI 237 (459)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECTTS-CEEEEEEEEEEETHHHHHTTC
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCCCCHHHCC-CCEEEEEEEECCCCCCCCCCE
T ss_conf 7518817899999999999999985244341320001223345303310111111136-640563155146521300134
Q ss_pred EEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 473389984101042004322899999999883468998386582223101
Q gi|254780680|r 367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430)
Q Consensus 367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430)
.|.+.+++ .+++|...- ++ ..|++.++++.|....| .++|.-+-|+-
T Consensus 238 ~~~~~~~~-~~~~~~~s~-gi-~~rli~~~i~~~~d~~G-l~lpp~iap~q 284 (459)
T 1nj8_A 238 IFETPTGD-KDYAYQTCY-GI-SDRVIASIIAIHGDEKG-LILPPIVAPIQ 284 (459)
T ss_dssp EEECTTSS-EEECEEEEE-EE-CTHHHHHHHHHHCBTTB-CCCCTTSCSSS
T ss_pred EEECCCCC-CCCEEECCC-CH-HHHHHHHHHHHHHHHCC-CCCCCCCCCCC
T ss_conf 53045787-444121131-12-23677788987654316-51233335663