HHsearch results for GI: 254780680 and protein with PDBid: 1nnh_A
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1
Probab=95.78 E-value=0.0094 Score=39.59 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHH---H--HHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCC
Q ss_conf 88999999999998622320320212356202788---9--865514224767764310002313454114544534205
Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEA---M--YGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEII 245 (430)
Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~---~--~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l 245 (430)
.-++.-.+++.+-++. .++||++|.||.+-.... . .++|..| |.-+.| +.+.||.-..|. |+...+
T Consensus 14 il~~Rs~i~~~iR~ff-~~~~f~EV~tPil~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~L~~Spql-----~~k~~l 84 (294)
T 1nnh_A 14 TLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEP-AEVEIY--GVKMRLTHSMIL-----HKQLAI 84 (294)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEEECCCCEESCCCCCCSCTTCCCCCC-CEEEET--TEEEEECSCSHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCEEECCCCHHH-----HHHHHH
T ss_conf 9999999999999999-9889999848734566777677655676635-635678--966751578888-----898998
Q ss_pred CHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHHHHHH
Q ss_conf 9555042088532210788433554343212222102002121-278650145789899
Q gi|254780680|r 246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS-ITREEDSFTEHERML 303 (430)
Q Consensus 246 ~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~-~~~pe~S~~~~e~~~ 303 (430)
.. .+ =|+..++||||.|.+.. + +--..-+|+.+|... +++-++-....++|+
T Consensus 85 ~~-g~-~~vf~I~~~FR~E~~~~--~--~~rH~~EFtmLE~e~~~~d~~dlm~~~e~li 137 (294)
T 1nnh_A 85 AM-GL-KKIFVLSPNIRLESRQK--D--DGRHAYEFTQLDFEVERAKMEDIMRLIERLV 137 (294)
T ss_dssp HT-TC-CEEEEEEEEECCCCGGG--C--SSSCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred HH-HC-CCCEEEECEECCCCCCC--C--CCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 73-02-56446504564787888--8--7755400146505984001989999999999