HHsearch results for GI: 254780680 and protein with PDBid: 1nyr_A

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.91  E-value=9.9e-25  Score=202.89  Aligned_cols=264  Identities=20%  Similarity=0.293  Sum_probs=217.2

Q ss_pred             CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf             62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r  138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD  217 (430)
Q Consensus       138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~  217 (430)
                      -+||-.||+.++|+.|..   -+|+|+|++.-.|+++-+.|.+|+-+. ..+.||.+|.+|.+.+.+....+|++.++.+
T Consensus       240 ~rdhr~lg~~~~lf~f~~---~~~~G~~~wlP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~~Lw~~SGh~~~y~~  315 (645)
T 1nyr_A          240 ERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDK-EVSMGYDHVYTPVLANVDLYKTSGHWDHYQE  315 (645)
T ss_dssp             HTCHHHHHHHTTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHH-HHHTTEEECBCCSEEETHHHHHHTHHHHCTT
T ss_pred             HCCHHHHHHHCCCEECCC---CCCCCEEEEHHHHHHHHHHHHHHHHHH-HHHHCCEEECCCCCCCHHHHHCCCCCCEECC
T ss_conf             455666665225477565---358960773332899999999999999-9860854621642146556531566341114


Q ss_pred             HHHHH-----HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             77643-----1000231345411454453420595550420885322107884335543432122221020021212786
Q gi|254780680|r  218 DMFCT-----TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE  292 (430)
Q Consensus       218 ~~y~~-----~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p  292 (430)
                      .+|..     ++.++|-||+|-+.+.+|+..+..+.+||+|++-+++|||.|.-  |+ ..||.|+.+|..-++..||++
T Consensus       316 ~m~~~~~~~~~e~~~LrP~~~~~~~~~~~~~~~SyrdLPlrl~qig~~fR~E~~--~~-~~gl~R~ReF~q~d~h~F~~~  392 (645)
T 1nyr_A          316 DMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS--GA-VSGLQRVRGMTLNDSHIFVRP  392 (645)
T ss_dssp             SSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT--TT-CBTTTBCSEEEEEEEEEEECG
T ss_pred             CEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC--CC-CCCCCCEEEEEECCCEEEECH
T ss_conf             202566416664240456564314577775320345688642454004446654--45-666551234897263587070


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCC----------------------------
Q ss_conf             5014578989999999999841067530378011784434024101101004----------------------------
Q gi|254780680|r  293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ----------------------------  344 (430)
Q Consensus       293 e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~----------------------------  344 (430)
                      +++.++..+++....++|+.||+.+..+.+.+++-+.++..-.+-+.|--..                            
T Consensus       393 ~q~~~e~~~~~~~~~~vy~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~k~  472 (645)
T 1nyr_A          393 DQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKL  472 (645)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
T ss_conf             77999999999999999999689734778741689871220462677789999888889863975121246110147752


Q ss_pred             -------CCEEEEEEECCCCCHHHHHCCCEEECCCCCCCC--EEEE-ECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf             -------833237531021007645326847338998410--1042-004322899999999883468998386582223
Q gi|254780680|r  345 -------NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLK--FTHT-LNGSGVAVGRCLIAILENYLNADGSVTIPTVLR  414 (430)
Q Consensus       345 -------~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~--~~ht-lNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~  414 (430)
                             ..-.+..+.-......+.|.++.|.+.++.+..  .+|. +-|   .+.|++++++|.+.     .+.|-.|-
T Consensus       473 ~~~~~~~~~~~~~~~t~qld~~~~~~f~l~y~~~~~~~~~p~~i~~gi~G---~ieR~ia~liE~~~-----g~lP~~LA  544 (645)
T 1nyr_A          473 DVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVS---TMERFVAFLTEETK-----GAFPTWLA  544 (645)
T ss_dssp             EEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHHHHHT-----TCCCTTTC
T ss_pred             CCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEECCCC---HHHHHHHHHHHHCC-----CCCCCCCC
T ss_conf             00010015871001110012357732125897044113425401343310---89999999735318-----86898728


Q ss_pred             CC
Q ss_conf             10
Q gi|254780680|r  415 PY  416 (430)
Q Consensus       415 py  416 (430)
                      ||
T Consensus       545 P~  546 (645)
T 1nyr_A          545 PK  546 (645)
T ss_dssp             SS
T ss_pred             CC
T ss_conf             85