HHsearch results for GI: 254780680 and protein with PDBid: 1nyr_A
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.91 E-value=9.9e-25 Score=202.89 Aligned_cols=264 Identities=20% Similarity=0.293 Sum_probs=217.2
Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH
Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476
Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430)
Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430)
-+||-.||+.++|+.|.. -+|+|+|++.-.|+++-+.|.+|+-+. ..+.||.+|.+|.+.+.+....+|++.++.+
T Consensus 240 ~rdhr~lg~~~~lf~f~~---~~~~G~~~wlP~G~~i~~~le~~ir~~-~~~~Gy~EV~tP~l~~~~Lw~~SGh~~~y~~ 315 (645)
T 1nyr_A 240 ERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDK-EVSMGYDHVYTPVLANVDLYKTSGHWDHYQE 315 (645)
T ss_dssp HTCHHHHHHHTTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHH-HHHTTEEECBCCSEEETHHHHHHTHHHHCTT
T ss_pred HCCHHHHHHHCCCEECCC---CCCCCEEEEHHHHHHHHHHHHHHHHHH-HHHHCCEEECCCCCCCHHHHHCCCCCCEECC
T ss_conf 455666665225477565---358960773332899999999999999-9860854621642146556531566341114
Q ss_pred HHHHH-----HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf 77643-----1000231345411454453420595550420885322107884335543432122221020021212786
Q gi|254780680|r 218 DMFCT-----TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE 292 (430)
Q Consensus 218 ~~y~~-----~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p 292 (430)
.+|.. ++.++|-||+|-+.+.+|+..+..+.+||+|++-+++|||.|.- |+ ..||.|+.+|..-++..||++
T Consensus 316 ~m~~~~~~~~~e~~~LrP~~~~~~~~~~~~~~~SyrdLPlrl~qig~~fR~E~~--~~-~~gl~R~ReF~q~d~h~F~~~ 392 (645)
T 1nyr_A 316 DMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS--GA-VSGLQRVRGMTLNDSHIFVRP 392 (645)
T ss_dssp SSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT--TT-CBTTTBCSEEEEEEEEEEECG
T ss_pred CEEEEEECCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC--CC-CCCCCCEEEEEECCCEEEECH
T ss_conf 202566416664240456564314577775320345688642454004446654--45-666551234897263587070
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCC----------------------------
Q ss_conf 5014578989999999999841067530378011784434024101101004----------------------------
Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ---------------------------- 344 (430)
Q Consensus 293 e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~---------------------------- 344 (430)
+++.++..+++....++|+.||+.+..+.+.+++-+.++..-.+-+.|--..
T Consensus 393 ~q~~~e~~~~~~~~~~vy~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~k~ 472 (645)
T 1nyr_A 393 DQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKL 472 (645)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
T ss_conf 77999999999999999999689734778741689871220462677789999888889863975121246110147752
Q ss_pred -------CCEEEEEEECCCCCHHHHHCCCEEECCCCCCCC--EEEE-ECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC
Q ss_conf -------833237531021007645326847338998410--1042-004322899999999883468998386582223
Q gi|254780680|r 345 -------NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLK--FTHT-LNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430)
Q Consensus 345 -------~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~--~~ht-lNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430)
..-.+..+.-......+.|.++.|.+.++.+.. .+|. +-| .+.|++++++|.+. .+.|-.|-
T Consensus 473 ~~~~~~~~~~~~~~~t~qld~~~~~~f~l~y~~~~~~~~~p~~i~~gi~G---~ieR~ia~liE~~~-----g~lP~~LA 544 (645)
T 1nyr_A 473 DVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVS---TMERFVAFLTEETK-----GAFPTWLA 544 (645)
T ss_dssp EEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHHHHHT-----TCCCTTTC
T ss_pred CCEEECCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEECCCC---HHHHHHHHHHHHCC-----CCCCCCCC
T ss_conf 00010015871001110012357732125897044113425401343310---89999999735318-----86898728
Q ss_pred CC
Q ss_conf 10
Q gi|254780680|r 415 PY 416 (430)
Q Consensus 415 py 416 (430)
||
T Consensus 545 P~ 546 (645)
T 1nyr_A 545 PK 546 (645)
T ss_dssp SS
T ss_pred CC
T ss_conf 85