HHsearch results for GI: 254780680 and protein with PDBid: 3err_A
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus}
Probab=100.00 E-value=0 Score=1012.08 Aligned_cols=419 Identities=34% Similarity=0.546 Sum_probs=377.0
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH
Q ss_conf 98844785199999999984698958899999999999999999999999999999----------------------99
Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSA----------------------QI 58 (430)
Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSK----------------------eI 58 (430)
|-|++.+++.+|.+.+.+..+....+.+.++..+++...-+..+. .++....+ .|
T Consensus 1 ~~~l~~~~~e~e~~~~~~~e~~~~~e~e~~~~~~e~~~~~~~~i~---~~~~~~~~dL~~a~P~l~~A~~al~~l~k~di 77 (536)
T 3err_A 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIA---DKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHL 77 (536)
T ss_dssp --CHHHHHSCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 900788777599999999999999999999989999999999999---99999999999835999999999964999789
Q ss_pred HHHHH---------------------------------------------------------------CC---C------
Q ss_conf 99864---------------------------------------------------------------49---9------
Q gi|254780680|r 59 GQAIA---------------------------------------------------------------EG---N------ 66 (430)
Q Consensus 59 g~~k~---------------------------------------------------------------~~---~------ 66 (430)
.++++ +. +
T Consensus 78 ~Elks~~~PP~~V~~v~eaV~illg~~~~~W~~akk~l~~~~Fl~~L~~fdkd~I~~~~i~ki~k~yi~~~~F~~e~i~k 157 (536)
T 3err_A 78 VEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNR 157 (536)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHHTTGGGCTTHHHHHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99972389967999999999999589999989999985735567887646921099999999999755687889999999
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCC
Q ss_conf --------------879999999999999886444666667788877443100225881122113555402420001565
Q gi|254780680|r 67 --------------LSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKP 132 (430)
Q Consensus 67 --------------~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~ 132 (430)
.....++.++++.++++|+.+++++.+++++++++++.|||+||++||+|.+| +|++|++||++|
T Consensus 158 ~S~Aa~~L~~WV~A~~~y~~v~k~v~plk~eL~elE~el~e~e~~l~~~ll~lPNi~~~~vP~G~~e-~n~~v~~~g~~~ 236 (536)
T 3err_A 158 ASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEE-ANREIKRVGGPP 236 (536)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCSSGG-GCEEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEEEECCCC
T ss_conf 8899999999998874499999998766888999998888888999889862258707888999986-786999968988
Q ss_pred CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC
Q ss_conf 66566621122022117310001122216753010564889999999999986223203202123562027889865514
Q gi|254780680|r 133 SAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI 212 (430)
Q Consensus 133 ~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l 212 (430)
.|+|+|++|++||+.+|++| ++|+|+||||||||+|+||+|||||+|||+|++ .++||++++||+|||+++|+||||+
T Consensus 237 ~~~f~pk~H~el~~~l~l~d-~~a~kvsGsrfy~l~g~~A~Le~AL~~f~ld~~-~~~gy~~v~~P~~v~~~~~~gtG~l 314 (536)
T 3err_A 237 EFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHF 314 (536)
T ss_dssp CCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCT
T ss_pred CCCCCCCCHHHHHHHCCCCC-HHHHEECCCCEEEEECHHHHHHHHHHHHHHHHH-HHCCCCHHHCHHHHHHHHHHHHCCC
T ss_conf 98999879999963534615-344333178769993859999999999999999-7604502301022246655222478
Q ss_pred HHHHHHHHHH-HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf 2247677643-100023134541145445342059555042088532210788433554343212222102002121278
Q gi|254780680|r 213 PKFADDMFCT-TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR 291 (430)
Q Consensus 213 p~f~~~~y~~-~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~ 291 (430)
|+|++++|.+ ++++||||||||||+|||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||++|+
T Consensus 315 p~f~~~~y~~~~~~~~LipTaEv~l~~~~~~~i~~~~~LP~~~~~~s~cfR~Eag~~g~dtrGL~RvhQF~KvE~~~~~~ 394 (536)
T 3err_A 315 PAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTE 394 (536)
T ss_dssp TTTGGGCCEETTTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEEC
T ss_pred CCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEEEECC
T ss_conf 53024555420023101566642034454075474865897655469824555565575442133313431489998536
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEE
Q ss_conf 6--50145789899999999998410675303780117844340241011010048332375310210076453268473
Q gi|254780680|r 292 E--EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR 369 (430)
Q Consensus 292 p--e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~ 369 (430)
| ++|+.+|++|+.++++||+.|+||||||++||||||++|++||||||||||+++|+||||||||+|||||||||||+
T Consensus 395 ~~~e~s~~~~~~~l~~~e~i~~~L~lpyrvv~~~~~dlg~~a~~kyDiE~w~P~~~~y~Ev~S~Snc~DfqsrRl~iry~ 474 (536)
T 3err_A 395 ASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR 474 (536)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCEEEEECCCCCEEEEECHHCHHHHHHHHCCCEEE
T ss_conf 51345799999999999999742488559996777768867875245189854879877573110101188885478888
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC
Q ss_conf 3899841010420043228999999998834689983865822231018801307334
Q gi|254780680|r 370 DPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430)
Q Consensus 370 ~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430)
+++|+ .+||||||||+||+||+|+|||||||++||+|.||+|||||| |.++|+|..
T Consensus 475 ~~~g~-~~~~htlngt~~a~~R~l~ailEn~q~~dg~i~iP~~L~~y~-~~~~i~p~~ 530 (536)
T 3err_A 475 DPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEPGA 530 (536)
T ss_dssp CTTSC-EEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-TSSEECCC-
T ss_pred CCCCC-EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHCCC-CCCEECCCC
T ss_conf 89998-874688207510888999999996569999884882322424-996545663