RPSBLAST alignment for GI: 254780680 and conserved domain: TIGR00415
>gnl|CDD|129509 TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. Length = 520
Score = 42.6 bits (100), Expect = 2e-04
Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 38/180 (21%)
Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGR------ 226
L RAL +F I+ + G+ E P L+ + M + + M+ C R
Sbjct: 225 LFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFE 284
Query: 227 ----WLIPTSEVSLTNL----------------------YSHEIIESKSLPLRFTTLAP- 259
LI E+ + L + E+I+++ P++F +
Sbjct: 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGW 344
Query: 260 SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319
++R EAG A +G+ R H+F + E V I E++ ++ L AE+ LDL +
Sbjct: 345 TYRWEAGGA----KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWT 400