RPSBLAST alignment for GI: 254780680 and conserved domain: TIGR00415

>gnl|CDD|129509 TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. Length = 520
 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 38/180 (21%)

Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGR------ 226
           L RAL +F I+    + G+ E   P L+  + M     +    + M+ C    R      
Sbjct: 225 LFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFE 284

Query: 227 ----WLIPTSEVSLTNL----------------------YSHEIIESKSLPLRFTTLAP- 259
                LI   E+ +  L                      +  E+I+++  P++F   +  
Sbjct: 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGW 344

Query: 260 SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319
           ++R EAG A    +G+ R H+F + E V I   E++    ++ L  AE+    LDL +  
Sbjct: 345 TYRWEAGGA----KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWT 400