RPSBLAST alignment of GI: 254780680 and protein with PDBid: 1nj8

>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459

 Score = 98.3 bits (244), Expect = 3e-21
 Identities = 50/294 (17%), Positives = 105/294 (35%), Gaps = 24/294 (8%)

Query: 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVR 202
           +I E   + D     K  G    V   +   + R   + + +L   E G+ E   P+L+ 
Sbjct: 13  DILEKAEIYDVRYPIK--G--CGVYLPYGFKIRRYTFEIIRNLLD-ESGHDEALFPMLIP 67

Query: 203 DEAMYGTGQ-IPKFADDMFCTTDGR--------WLIPTSEVSLTNLYSHEIIESKSLPLR 253
           ++ +    + I  F D+++  T G          L PTSE  +  +    +     LP++
Sbjct: 68  EDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIK 127

Query: 254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI--TREEDSFTEHERMLSCAEEILK 311
              +  +FR E     + TR ++R  +    +      + +E++  + +  +S  ++   
Sbjct: 128 IYQIVNTFRYET----KHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFD 183

Query: 312 RLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDP 371
            L + Y +      D    A  T   +          +I++    G   S+     +  P
Sbjct: 184 TLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGR-TMQIATVHNLGQNFSKTFEIIFETP 242

Query: 372 NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKK 425
                    T         R + +I+  + +  G +  P V    +  + +I K
Sbjct: 243 TGDKDYAYQT---CYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFK 293