RPSBLAST alignment of GI: 254780680 and protein with PDBid: 2cja

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522
 Score =  242 bits (618), Expect = 2e-64
 Identities = 57/433 (13%), Positives = 116/433 (26%), Gaps = 73/433 (16%)

Query: 40  LIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEK--EEHEVCSS 97
            + K   I  R     + I +  A+  L ++     ++    E    LE    E E+   
Sbjct: 104 ALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMK-- 161

Query: 98  LKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIH--LSREHFEIGEALGLMD-FD 154
                     VP   + +     E     +  +  + +      EH    +    M    
Sbjct: 162 --------NRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEG 213

Query: 155 RATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK 214
              + S     +     A + R   + +++      GY E+  P LV  E    +G    
Sbjct: 214 WLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKG 273

Query: 215 FADDMFCTTDGR----------------------------------WLIPTSEVSLTNLY 240
              +++     +                                   +            
Sbjct: 274 VYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYV 333

Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300
           + E + ++ +P++    + +             G+ R  +F + E+V I  +E+     E
Sbjct: 334 AGETLPNEEIPVKVFDRSGTSHRYESGG---IHGIERVDEFHRIEIVWIGTKEEVLKCAE 390

Query: 301 RMLSCAEEILK-RLDLHYRVVSL---------CTGDLGFSACKTYDLEVWLAGQNLYREI 350
            +      I    LD+ +R   +           G    +   T D E  L  +    E 
Sbjct: 391 ELHDRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEW 450

Query: 351 SSCST---CGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407
                    G+   +  N + +           +   SGV + R     L          
Sbjct: 451 LEFQNVSINGDKYPKGFNVKLQSG-----DELWS-GCSGVGLERWAAVFLAQKGLDPA-- 502

Query: 408 TIPTVLRPYMNNL 420
             P   R  +  +
Sbjct: 503 NWPEEFRNRVGEM 515