Query gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:37:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780682.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3fo8_D Tail sheath protein GP 29.0 32 0.00095 15.0 1.9 47 62-109 39-85 (123)
2 >3foa_A Tail sheath protein GP 26.8 35 0.001 14.8 1.8 47 62-109 44-90 (128)
3 >2ntx_A EMB|CAB41934.1, prone8 24.7 25 0.00073 15.7 0.7 17 39-55 185-201 (269)
4 >3iay_A DNA polymerase delta c 14.4 28 0.00083 15.4 -0.9 18 37-54 49-66 (78)
5 >2e60_A SFRS8 protein, splicin 14.2 64 0.0019 13.3 0.9 44 3-46 33-79 (101)
6 >1xi4_A Clathrin heavy chain; 12.2 88 0.0026 12.5 1.1 35 132-174 4-38 (45)
7 >1bpo_A Protein (clathrin); cl 12.1 92 0.0027 12.4 1.7 36 132-175 4-39 (45)
8 >1ug0_A Splicing factor 4; SUR 11.6 96 0.0028 12.3 2.3 44 3-46 33-80 (88)
9 >3bzw_A Putative lipase; prote 10.4 52 0.0015 13.8 -0.6 16 22-37 37-52 (52)
10 >1gxi_E Photosystem I reaction 9.5 73 0.0022 12.9 -0.0 5 27-31 14-18 (73)
No 1
>>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4} (D:15-137)
Probab=28.99 E-value=32 Score=15.04 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 455663104521113331899865521485058886166654210744
Q gi|254780682|r 62 DCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPK 109 (199)
Q Consensus 62 dctantanilipsrkiidyhrlleqkknhnlqyslinipsqnkqespk 109 (199)
|....--.+.|||.|||++-+.+.+--.-.-.+ -+.|-||.-+-|.-
T Consensus 39 D~~Gki~~vfiPsakIIa~Ak~~g~YP~lg~~W-t~ei~s~ssg~sa~ 85 (123)
T 3fo8_D 39 DADGKIKKINIPTAKIIAKAKEVGEYPTLGSNW-TAEISSSSSGLAAV 85 (123)
T ss_dssp CTTCCEEEEECCCHHHHHHHHHHTCTTTCCTTE-EEEECTTSSCBSCE
T ss_pred ECCCCEEEEECCHHHHHHHHHHCCCCCCCCCCC-EEEEEEECCCCEEE
T ss_conf 259958999877699999887507787778762-38998612675058
No 2
>>3foa_A Tail sheath protein GP18; alpha-beta, viral structural protein, bacteriophage T4, viral protein; 3.50A {Enterobacteria phage T4} PDB: 3foh_A 3foi_A (A:92-219)
Probab=26.77 E-value=35 Score=14.82 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 455663104521113331899865521485058886166654210744
Q gi|254780682|r 62 DCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPK 109 (199)
Q Consensus 62 dctantanilipsrkiidyhrlleqkknhnlqyslinipsqnkqespk 109 (199)
|....--.+.|||.|||++-+.+.+--.-.-.+ -+.|-||.-+-|.-
T Consensus 44 D~~Gki~~vfiPsakIIa~Ak~~g~YP~lg~~W-t~ei~s~ssg~sa~ 90 (128)
T 3foa_A 44 DADGKIKKINIPTAKIIAKAKEVGEYPTLGSNW-TAEISSSSSGLAAV 90 (128)
T ss_dssp CSSCCEEEEECCCHHHHHHHHHTTCSSCCCSSE-EEEECTTCSCCCCE
T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCCCCCCCC-CEEEEEECCCEEEE
T ss_conf 256751147764113321036731223311331-02455420330478
No 3
>>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A (A:1-213,A:310-365)
Probab=24.68 E-value=25 Score=15.68 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHCCCEE
Q ss_conf 88999999974246729
Q gi|254780682|r 39 LSHQIHKALMSISSGII 55 (199)
Q Consensus 39 lshqihkalmsissgii 55 (199)
..+||+||-|+|.+.+.
T Consensus 185 ~~nQilKAAmAINs~vL 201 (269)
T 2ntx_A 185 SVTQVQKAAXAINAQVL 201 (269)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999889898
No 4
>>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA- binding, DNA-directed DNA polymerase, exonuclease; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} (A:774-817,A:886-919)
Probab=14.39 E-value=28 Score=15.36 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHCCCE
Q ss_conf 888899999997424672
Q gi|254780682|r 37 PYLSHQIHKALMSISSGI 54 (199)
Q Consensus 37 pylshqihkalmsissgi 54 (199)
-||.||+.|.|+.|-..|
T Consensus 49 yyl~~ql~~pl~rif~pi 66 (78)
T 3iay_A 49 YYLTNQLQNPIISIVAPI 66 (78)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999875678999998864
No 5
>>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=14.15 E-value=64 Score=13.30 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=33.7
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHHHHHHHHH
Q ss_conf 0124301556789786530255451256589---8878888999999
Q gi|254780682|r 3 STILFLIKHKLKLHKNIMSKGKINESFWYIR---TLFPYLSHQIHKA 46 (199)
Q Consensus 3 stilflikhklklhknimskgkinesfwyir---tlfpylshqihka 46 (199)
.|..|..++....-..+|.+.+-|.-||++. .+++|....+..-
T Consensus 33 ktA~fVa~~G~~fE~~l~~k~~~n~~F~FL~~~~~~~~YY~~~l~~~ 79 (101)
T 2e60_A 33 RTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAM 79 (101)
T ss_dssp HHHHHHHHSCHHHHHHHHHHTTSCSTTGGGSTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999998349999999980478987504799998967999999999
No 6
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:23-67)
Probab=12.25 E-value=88 Score=12.46 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=22.0
Q ss_pred CCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCC
Q ss_conf 1246762230458988887511201125786112330102541
Q gi|254780682|r 132 TFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNH 174 (199)
Q Consensus 132 tfdntnletkiplpnnlkpnvcvkekklipprkninnlkdtnh 174 (199)
.|.++.+|. .--|||+|+.---+.--|-+|++.|.
T Consensus 4 ~F~~~TlES--------DkyVCVRE~~~~~~qVvIVdl~n~n~ 38 (45)
T 1xi4_A 4 GFSTLTMES--------DKFICIREKVGEQAQVVIIDMNDPSN 38 (45)
T ss_pred CCCCEEEEC--------CCEEEEECCCCCCCEEEEEECCCCCC
T ss_conf 766255415--------87799961479975499998899886
No 7
>>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS; 2.60A {Rattus norvegicus} (A:23-67)
Probab=12.09 E-value=92 Score=12.36 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=23.7
Q ss_pred CCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCE
Q ss_conf 12467622304589888875112011257861123301025414
Q gi|254780682|r 132 TFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHR 175 (199)
Q Consensus 132 tfdntnletkiplpnnlkpnvcvkekklipprkninnlkdtnhr 175 (199)
.|.++.+|.. --|||+|+.---+.--|-+|++.|.-
T Consensus 4 ~F~~~TlESD--------kyVCVRE~~~~~~qVvIVdl~n~n~v 39 (45)
T 1bpo_A 4 GFSTLTMESD--------KFICIREKVGEQAQVVIIDMNDPSNP 39 (45)
T ss_dssp STTTEEEEET--------TEEEEEECCTTCCEEEEEETTSTTSC
T ss_pred CCCCEEEECC--------CEEEEECCCCCCCEEEEEECCCCCCC
T ss_conf 6552767548--------77999604689751999988998764
No 8
>>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} (A:)
Probab=11.56 E-value=96 Score=12.26 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=33.4
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHH----HHHHHHHHHHHH
Q ss_conf 01243015567897865302554512565898----878888999999
Q gi|254780682|r 3 STILFLIKHKLKLHKNIMSKGKINESFWYIRT----LFPYLSHQIHKA 46 (199)
Q Consensus 3 stilflikhklklhknimskgkinesfwyirt----lfpylshqihka 46 (199)
.|..|..++-...-.-+|.+.+-|.-||+++- .++|....+..-
T Consensus 33 ~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~~~~~~~~~yY~~~l~~~ 80 (88)
T 1ug0_A 33 KLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 999999971799999999865699860534789998728999999999
No 9
>>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} (A:108-159)
Probab=10.36 E-value=52 Score=13.82 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=9.8
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 2554512565898878
Q gi|254780682|r 22 KGKINESFWYIRTLFP 37 (199)
Q Consensus 22 kgkinesfwyirtlfp 37 (199)
+|.||...-|..++||
T Consensus 37 rGRINi~l~~lK~~~P 52 (52)
T 3bzw_A 37 RGRINIGITQLKKLFP 52 (52)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998414
No 10
>>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} (E:)
Probab=9.55 E-value=73 Score=12.94 Aligned_cols=5 Identities=80% Similarity=2.188 Sum_probs=0.0
Q ss_pred CHHHH
Q ss_conf 12565
Q gi|254780682|r 27 ESFWY 31 (199)
Q Consensus 27 esfwy 31 (199)
||+||
T Consensus 14 ESYWy 18 (73)
T 1gxi_E 14 ESYWY 18 (73)
T ss_dssp SSTTT
T ss_pred CCCCC
T ss_conf 40101
Done!