Query gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:12:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780682.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fhta1 d.9.1.1 (A:4-71) Macro 13.5 20 0.0015 13.9 0.2 24 58-81 3-26 (68)
2 d1in1a_ c.15.1.2 (A:) DNA liga 12.5 18 0.0013 14.2 -0.3 11 152-162 77-87 (88)
3 d1ug0a_ a.217.1.1 (A:) Splicin 10.9 41 0.003 12.1 2.1 42 3-44 33-78 (88)
4 d2v7fa1 a.4.5.84 (A:2-150) Rib 10.1 35 0.0026 12.5 0.5 85 24-121 44-133 (149)
5 d1huna_ d.9.1.1 (A:) Macrophag 9.6 34 0.0025 12.6 0.3 23 59-81 7-29 (69)
6 d1g91a_ d.9.1.1 (A:) Myeloid p 9.1 38 0.0027 12.4 0.3 23 59-81 7-29 (77)
7 d2gtsa1 a.25.5.1 (A:4-80) Hypo 9.0 48 0.0035 11.7 1.5 11 117-127 67-77 (77)
8 d1b50a_ d.9.1.1 (A:) Macrophag 6.9 46 0.0034 11.8 -0.0 22 59-80 6-27 (69)
9 d1esra_ d.9.1.1 (A:) Monocyte 6.5 54 0.0039 11.4 0.2 22 59-80 7-28 (76)
10 d1ha6a_ d.9.1.1 (A:) Macrophag 6.5 54 0.0039 11.4 0.2 22 59-80 2-23 (70)
No 1
>d2fhta1 d.9.1.1 (A:4-71) Macrophage inflammatory protein, MIP {Kaposi's sarcoma-associated herpesvirus, VMIP-II [TaxId: 37296]}
Probab=13.48 E-value=20 Score=13.91 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.8
Q ss_pred ECCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 803445566310452111333189
Q gi|254780682|r 58 LSPTDCTANTANILIPSRKIIDYH 81 (199)
Q Consensus 58 lsptdctantanilipsrkiidyh 81 (199)
.+|+||--++..--||.+.|.+|.
T Consensus 3 ~~P~~CC~~~~~~~Ip~~~I~~y~ 26 (68)
T d2fhta1 3 HRPDKCCLGYQKRPLPQVLLSSWY 26 (68)
T ss_dssp CCCCCCCSSCCCSCCCGGGEEEEE
T ss_pred CCCCCCCCCCCCCCCCHHHEEEEE
T ss_conf 997623376668738923845999
No 2
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.53 E-value=18 Score=14.22 Aligned_cols=11 Identities=27% Similarity=1.180 Sum_probs=8.9
Q ss_pred CEEECCCCCCC
Q ss_conf 11201125786
Q gi|254780682|r 152 VCVKEKKLIPP 162 (199)
Q Consensus 152 vcvkekklipp 162 (199)
-|+++++|+||
T Consensus 77 dci~~~~lLPp 87 (88)
T d1in1a_ 77 ACIRKRRLVAP 87 (88)
T ss_dssp HHHHHTSCCCC
T ss_pred HHHHCCCCCCC
T ss_conf 99874786899
No 3
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.86 E-value=41 Score=12.12 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=30.9
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCHHHHHH----HHHHHHHHHHH
Q ss_conf 0124301556789786530255451256589----88788889999
Q gi|254780682|r 3 STILFLIKHKLKLHKNIMSKGKINESFWYIR----TLFPYLSHQIH 44 (199)
Q Consensus 3 stilflikhklklhknimskgkinesfwyir----tlfpylshqih 44 (199)
.|..|..++-...-..+|.+-+-|.-||+++ .+++|....+.
T Consensus 33 ~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~~~~~~~YY~~kl~ 78 (88)
T d1ug0a_ 33 KLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVA 78 (88)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 9999999837999999998666998704207999987289999999
No 4
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=10.15 E-value=35 Score=12.51 Aligned_cols=85 Identities=22% Similarity=0.349 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHH----HHHHHHH-HHHHHHCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 54512565898878----8889999-999742467299980344556631045211133318998655214850588861
Q gi|254780682|r 24 KINESFWYIRTLFP----YLSHQIH-KALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLIN 98 (199)
Q Consensus 24 kinesfwyirtlfp----ylshqih-kalmsissgiililsptdctantanilipsrkiidyhrlleqkknhnlqyslin 98 (199)
-.++.+||+|.--- |+...+- .+|-.+-+|-- +-......----|++||-+ .|.|-..-.+-- .
T Consensus 44 P~~~DW~y~RaASilRkiY~~gpvGv~~Lr~~YGg~k------~rG~~P~h~~~~Sg~iiR~--~LQqLE~~glVe---k 112 (149)
T d2v7fa1 44 PEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRK------NRGHAPERFYKAGGSIIRK--ALQQLEAAGFVE---K 112 (149)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHCSBCHHHHHHHHCC----------CCCTTSCCCHHHHHHHH--HHHHHHHTTSEE---E
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC------CCCCCCCCCCCCCCHHHHH--HHHHHHHCCCEE---E
T ss_conf 9887527999999999998708963889999978898------8999998767776389999--999998688866---7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 66654210744333108999999
Q gi|254780682|r 99 IPSQNKQESPKNANNNILDHIAL 121 (199)
Q Consensus 99 ipsqnkqespknannnildhial 121 (199)
.|.....-+|+ ....||.||-
T Consensus 113 ~~~~GR~lT~~--G~~~LD~iA~ 133 (149)
T d2v7fa1 113 VPGKGRVITPK--GRSFLDKIAT 133 (149)
T ss_dssp ETTTEEEECHH--HHHHHHHHHH
T ss_pred CCCCCCEECHH--HHHHHHHHHH
T ss_conf 69999477888--9999999999
No 5
>d1huna_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), 1-beta [TaxId: 9606]}
Probab=9.64 E-value=34 Score=12.57 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=19.5
Q ss_pred CCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 03445566310452111333189
Q gi|254780682|r 59 SPTDCTANTANILIPSRKIIDYH 81 (199)
Q Consensus 59 sptdctantanilipsrkiidyh 81 (199)
.|.+|-.++..--||.+.|.+|.
T Consensus 7 ~p~~CC~~~~~~~Ip~~~I~~y~ 29 (69)
T d1huna_ 7 PPTACCFSYTARKLPRNFVVDYY 29 (69)
T ss_dssp CCCBCCSSCCSSCCCGGGCSEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEEEE
T ss_conf 99762476568818935846999
No 6
>d1g91a_ d.9.1.1 (A:) Myeloid progenitor inhibitory factor-1 (MPIF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=38 Score=12.35 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.2
Q ss_pred CCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 03445566310452111333189
Q gi|254780682|r 59 SPTDCTANTANILIPSRKIIDYH 81 (199)
Q Consensus 59 sptdctantanilipsrkiidyh 81 (199)
++.||-..+..--||.+.|..|.
T Consensus 7 ~~~~CC~~~~~~~Ip~~~i~~y~ 29 (77)
T d1g91a_ 7 TSADCCISYTPRSIPCSLLESYF 29 (77)
T ss_dssp SCCCSCCCBCCSCCCGGGCCEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEEEE
T ss_conf 83361155158718936967999
No 7
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=8.99 E-value=48 Score=11.71 Aligned_cols=11 Identities=64% Similarity=0.987 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999865
Q gi|254780682|r 117 DHIALLKERLR 127 (199)
Q Consensus 117 dhiallkerlr 127 (199)
..||.||||.|
T Consensus 67 eqiawlkerir 77 (77)
T d2gtsa1 67 EQIAWLKERIR 77 (77)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHCC
T ss_conf 99999998729
No 8
>d1b50a_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), 1-alpha [TaxId: 9606]}
Probab=6.91 E-value=46 Score=11.81 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEECCHHHHHH
Q ss_conf 0344556631045211133318
Q gi|254780682|r 59 SPTDCTANTANILIPSRKIIDY 80 (199)
Q Consensus 59 sptdctantanilipsrkiidy 80 (199)
+|++|--++..--||.+.|.+|
T Consensus 6 ~p~~CC~~~~~~~Ip~~~i~~y 27 (69)
T d1b50a_ 6 TPTACCFSYTSRQIPQNFIAAY 27 (69)
T ss_dssp SCCCCCSCCCSSCCCTTTCCEE
T ss_pred CCCCCCCCCCCCCCCHHHEEEE
T ss_conf 9965044736870892483399
No 9
>d1esra_ d.9.1.1 (A:) Monocyte chemoattractant protein-2 (MCP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.54 E-value=54 Score=11.44 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEECCHHHHHH
Q ss_conf 0344556631045211133318
Q gi|254780682|r 59 SPTDCTANTANILIPSRKIIDY 80 (199)
Q Consensus 59 sptdctantanilipsrkiidy 80 (199)
.|+||-.++..--||.+.|..|
T Consensus 7 ~p~~CC~~~~~~~Ip~~~i~~y 28 (76)
T d1esra_ 7 IPITCCFNVINRKIPIQRLESY 28 (76)
T ss_dssp SCCCCCSSCCCSCCCGGGEEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEEE
T ss_conf 9866327556883882487999
No 10
>d1ha6a_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Mouse (Mus musculus), ccl20/mip-3a [TaxId: 10090]}
Probab=6.52 E-value=54 Score=11.42 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEECCHHHHHH
Q ss_conf 0344556631045211133318
Q gi|254780682|r 59 SPTDCTANTANILIPSRKIIDY 80 (199)
Q Consensus 59 sptdctantanilipsrkiidy 80 (199)
|..||-..+..--||.+.|.+|
T Consensus 2 s~l~CC~~~~~~~Ip~~~I~~y 23 (70)
T d1ha6a_ 2 SNYDCCLSYIQTPLPSRAIVGF 23 (70)
T ss_dssp CCCCCSSSBCSSCCCGGGEEEE
T ss_pred CCCCCCCCCCCCCCCCHHEEEE
T ss_conf 8775735634870682051099
Done!