BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040359|gb|ACT57155.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 199

 Score =  340 bits (872), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60
           MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP
Sbjct: 1   MRSTILFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP 60

Query: 61  TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120
           TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA
Sbjct: 61  TDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIA 120

Query: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180
           LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN
Sbjct: 121 LLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKN 180

Query: 181 NQEIKNIHHKKNKPRLHCQ 199
           NQEIKNIHHKKNKPRLHCQ
Sbjct: 181 NQEIKNIHHKKNKPRLHCQ 199


>gi|315122207|ref|YP_004062696.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495609|gb|ADR52208.1| Peptidase M23 [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 344

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 30/171 (17%)

Query: 55  ILILSPTDCTANTANILIPSRKIIDYH-RLLEQKKNHNLQYSLINIPSQNKQESPKNANN 113
           +LIL  T    N  NIL+   KI +YH RL+EQK N   Q  +I IP   KQE P N NN
Sbjct: 23  LLILVSTSDKTNAENILVLPSKITNYHNRLVEQKNNPEKQ--VIPIPLPTKQEYPSNTNN 80

Query: 114 NILDHIALLKERLRTDINT-FDNTNLETKIPLP----------NNLKPNVCVKEKKLIPP 162
             +D   LL ++   D N  + +  L  KIPLP          N+L  N C++ K     
Sbjct: 81  KTIDQNTLLAKKGFVDKNNLYSSMYLSKKIPLPNKCLLFPPDNNSLHLNNCIENKSPNSS 140

Query: 163 RKNINNLKDTNHR--------------LKIKNNQEIKNIHHKKNK--PRLH 197
           +KNI++ +                    K+KNNQ+IK+I +KKN   P++H
Sbjct: 141 KKNISHTRKIPKYKKNNPKKSGNIAPAFKVKNNQKIKHIQYKKNNYSPQIH 191


>gi|145523511|ref|XP_001447594.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415105|emb|CAK80197.1| unnamed protein product [Paramecium tetraurelia]
          Length = 983

 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 86  QKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLP 145
           + KNH L+  L+N+    K E P NA   ++  I LLK+   +D N  ++++L  +    
Sbjct: 815 RNKNHILEAELMNLKEAKKIEDPNNATKRLISEIQLLKQSQVSDNNNINDSSLRRE---R 871

Query: 146 NNLKPNVCVKEKKLIPPRKNINNLKDTN----HRLKIKNNQEIK 185
           N+L+             R+ +  LKD+N    H+++  N + +K
Sbjct: 872 NDLQEE----------NRRLVQLLKDSNKWDLHKMQQDNERLLK 905


>gi|325690047|gb|EGD32051.1| hypothetical protein HMPREF9382_1005 [Streptococcus sanguinis
           SK115]
          Length = 547

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 115 ILDHIALLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTN 173
           I+D++  ++E+LR DI  +DN    T +    NL   V  K+KK I PR  ++N +  N
Sbjct: 275 IIDNVNCIREKLRFDIEDYDNFIHYTSLKTLKNL---VYTKDKKNIYPRLRLSNARQMN 330


>gi|295702542|ref|YP_003595617.1| extracellular ribonuclease [Bacillus megaterium DSM 319]
 gi|294800201|gb|ADF37267.1| Extracellular ribonuclease [Bacillus megaterium DSM 319]
          Length = 384

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)

Query: 34  TLFPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQ 93
           TL PY SH   K++ SIS+        T  T    +   P+  + DY+R + +K  ++L+
Sbjct: 120 TLTPYFSHPGIKSVTSIST-------ETGGTDPAPDPTEPTVPVEDYYRTVAEKTGNSLK 172

Query: 94  YSLINIPSQNKQ--------------ESPKNANNNIL 116
             L NI   + +              E P NANN IL
Sbjct: 173 TELHNIIDHHTELSYSAVWEALKKTDEDPANANNVIL 209


>gi|51490739|emb|CAH18713.1| extracellular ribonuclease [Bacillus megaterium]
          Length = 382

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)

Query: 34  TLFPYLSHQIHKALMSISSGIILILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQ 93
           TL PY SH   K++ SIS+        T  T    +   P+  + DY+R + +K  ++L+
Sbjct: 120 TLTPYFSHPGIKSVTSIST-------ETGGTDPAPDPTEPTVPVEDYYRTVAEKTGNSLK 172

Query: 94  YSLINIPSQNKQ--------------ESPKNANNNIL 116
             L NI   + +              E P NANN IL
Sbjct: 173 TELHNIIDHHTELSYSAVWEALKETDEDPANANNVIL 209


>gi|113476744|ref|YP_722805.1| WD-40 repeat-containing protein [Trichodesmium erythraeum IMS101]
 gi|110167792|gb|ABG52332.1| WD-40 repeat [Trichodesmium erythraeum IMS101]
          Length = 1304

 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 32/156 (20%)

Query: 65  ANTANILIPSRKIIDYHRLL--EQK--------KNHNLQYSLI----NIPSQNKQESPKN 110
           AN +N  IP  +    H  +  EQK        KN N Q +      N      Q++ KN
Sbjct: 409 ANVSNFEIPENQKNYSHNEINSEQKLLVNPFKLKNFNNQVTNFQLGENFSGLESQDNQKN 468

Query: 111 ANNNILDHIALLKERLRTDINTFD----NTNLETKIP----------LPNNLKPNVCVKE 156
            +NNI+D      E L  D+N FD    N NLE  I             NNL   +  ++
Sbjct: 469 QSNNIIDPEQKQLENL-LDLNQFDSSVTNLNLEENISNLQLFENHQIQSNNL---IHPQQ 524

Query: 157 KKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHHKKN 192
           K+L  P + I + K+  ++++ K  +++    HK N
Sbjct: 525 KELETPGEKITHQKNNKNQVRDKKAKKLAISQHKLN 560


>gi|296083309|emb|CBI22945.3| unnamed protein product [Vitis vinifera]
          Length = 628

 Score = 36.2 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)

Query: 65  ANTANILIPSRKIIDYHRLLEQKKNHNLQY------SLINIPSQNKQESPKNANNNI--L 116
           AN    L+P  KI D+H   ++ +N N+         L+N+ SQNK    K+   ++   
Sbjct: 387 ANAEEALLPIPKIFDFHEKNKRYQNSNIDPDEIMADDLMNVRSQNKAVESKDGLESVEAS 446

Query: 117 DHIALLKERLRTDINTFDNTNLETKIPLPNNLK-PNVCVKEKKLIPPRK 164
           +  + L+E+LR+ +   DN +  T   + N+ K   + ++E   +PP+K
Sbjct: 447 NETSCLEEQLRS-LGLLDNKDDLTSNSMLNSRKFKGISLEEN--MPPKK 492


>gi|57096618|ref|XP_532571.1| PREDICTED: similar to SHC SH2-domain binding protein 1 [Canis
           familiaris]
          Length = 666

 Score = 35.8 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 72  IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
           +PS  I+DYH LL Q     +K  NL+ SL N  S ++QE+        +   I  LK++
Sbjct: 233 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLKLYSEIEQLKQK 292

Query: 126 LRTDINTF--------DNTNLETKIPLPNNLK 149
           L+   N           N+N++ K   PN  K
Sbjct: 293 LKLIENPLLRYVFGYQKNSNIQAKGIRPNGQK 324


>gi|147853966|emb|CAN79552.1| hypothetical protein VITISV_025726 [Vitis vinifera]
          Length = 692

 Score = 35.8 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)

Query: 65  ANTANILIPSRKIIDYHRLLEQKKNHNLQY------SLINIPSQNKQESPKNANNNI--L 116
           AN    L+P  KI D+H   ++ +N N+         L+N+ SQNK    K+   ++   
Sbjct: 451 ANAEEALLPIPKIFDFHEKNKRYQNSNIDPDEIMADDLMNVRSQNKAVESKDDLESVEAS 510

Query: 117 DHIALLKERLRTDINTFDNTNLETKIPLPNNLK-PNVCVKEKKLIPPRK 164
           +  + L+E+LR+ +   DN +  T   + N+ K   + ++E   +PP+K
Sbjct: 511 NETSCLEEQLRS-LGLLDNKDDLTSNSMLNSTKFKGISLEEN--MPPKK 556


>gi|74201453|dbj|BAE26159.1| unnamed protein product [Mus musculus]
          Length = 668

 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 72  IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
           +PS  I+DYH LL Q     +K  NL+ SL N  S ++QE+       N+   I  LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298

Query: 126 LR 127
           L+
Sbjct: 299 LK 300


>gi|74146441|dbj|BAE28972.1| unnamed protein product [Mus musculus]
          Length = 357

 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 72  IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
           +PS  I+DYH LL Q     +K  NL+ SL N  S ++QE+       N+   I  LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298

Query: 126 LR 127
           L+
Sbjct: 299 LK 300


>gi|6755508|ref|NP_035499.1| SHC SH2 domain-binding protein 1 [Mus musculus]
 gi|81882097|sp|Q9Z179|SHCBP_MOUSE RecName: Full=SHC SH2 domain-binding protein 1; AltName:
           Full=Protein expressed in activated lymphocytes;
           Short=mPAL; AltName: Full=SHC-binding protein
 gi|4102877|gb|AAD01613.1| Shc binding protein [Mus musculus]
 gi|47683039|gb|AAH70455.1| Shc SH2-domain binding protein 1 [Mus musculus]
 gi|148690064|gb|EDL22011.1| Shc SH2-domain binding protein 1, isoform CRA_b [Mus musculus]
          Length = 668

 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 72  IPSRKIIDYHRLLEQ-----KKNHNLQYSLINIPSQNKQESPKNANN-NILDHIALLKER 125
           +PS  I+DYH LL Q     +K  NL+ SL N  S ++QE+       N+   I  LK++
Sbjct: 239 VPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLNLYSEIEQLKQK 298

Query: 126 LR 127
           L+
Sbjct: 299 LK 300


>gi|66805773|ref|XP_636608.1| WD40 repeat-containing protein [Dictyostelium discoideum AX4]
 gi|60464996|gb|EAL63106.1| WD40 repeat-containing protein [Dictyostelium discoideum AX4]
          Length = 560

 Score = 35.8 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 13  LKLHKNIMSKGKI--NESFW--YIRTLFPYLSHQIHKALMSISSGIILILSPTDC-TANT 67
           L +  +++  G I  N + W  + R +   +++ I  ++ S+S    ++++P D    N 
Sbjct: 338 LSMDGSLLISGSIDGNCNIWDTFSRQIVRSIANTIKGSISSLS----VLMNPIDSLNFNV 393

Query: 68  ANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLR 127
                 ++K  D     E+  ++N++ +  ++P + KQ    + N NI   ++ L+ R+ 
Sbjct: 394 NGTAENNKKASDPIAPFEKYSSNNIERT--SVPIKLKQ---IDDNGNIKITVSNLQSRIE 448

Query: 128 TDINTFDNTNLETKIPLPNN-----LKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQ 182
             I    N  +     L NN     L   +   EK+++  +K I NL+D N+ LK+ N+Q
Sbjct: 449 NTI--VSNEQITNHTNLENNNKIIELNKTIQEYEKEILQFKKQIQNLQDNNNTLKLTNDQ 506


>gi|198425856|ref|XP_002124004.1| PREDICTED: similar to Serine/threonine-protein kinase atr (Ataxia
           telangiectasia and Rad3-related protein) (Xatr) [Ciona
           intestinalis]
          Length = 2497

 Score = 35.4 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 36/155 (23%)

Query: 10  KHKLKLHKNIMSKGKINESF----------WYIRTLFPYLSHQI-------HKALMSISS 52
           K+ L L K +   G ++ +F          W ++TL  YL  QI       +  L SIS+
Sbjct: 738 KNNLALSKYLELVGAMSRTFVDVSTLSVLEWTLKTLVQYLVRQIPHCYSTSYLQLESISA 797

Query: 53  GII-----------LILSPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLIN--- 98
            I            LI+    C AN  +   PSRK +D    L +  N +L+Y + N   
Sbjct: 798 DISRRQEVFRHHCRLIIET--CVANLLDENNPSRKPLDVMEDLSKLFNSSLEYFITNNLM 855

Query: 99  ---IPSQNKQESPKNANNNILDHIALLKERLRTDI 130
               P    Q+S  N  +N+L  ++   E+ R D+
Sbjct: 856 YLLPPIIVMQQSHNNKKDNLLTLLSENSEKSRIDM 890


>gi|30684987|ref|NP_564005.2| unknown protein [Arabidopsis thaliana]
 gi|22022516|gb|AAM83216.1| At1g16750/F19K19_26 [Arabidopsis thaliana]
 gi|24111407|gb|AAN46838.1| At1g16750/F19K19_26 [Arabidopsis thaliana]
 gi|332191371|gb|AEE29492.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 529

 Score = 35.4 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 29/151 (19%)

Query: 7   FLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSP--TDCT 64
           F ++H +K  KN + K         +R L    S Q HK  +S +S +   +    T+  
Sbjct: 45  FELEHDVKRLKNQLQKETA------MRALLLKASDQSHKIELSHASSLPRSVQELLTNIA 98

Query: 65  ANTANILIPSRKIIDYHRLLEQKKN------HNLQYSL--------INIPSQNKQESPKN 110
           A  A +    ++I+  H LL Q++N      +NL +SL        + +  +N+   PK 
Sbjct: 99  AMEATVSKLEQEIMSLHFLLIQERNERKLAEYNLTHSLSPPNALDLVRLSEKNESLRPK- 157

Query: 111 ANNNILDHIALLKERLRTDINTFDNTNLETK 141
                 DH A  + ++   + +FDN N  +K
Sbjct: 158 ------DHKAQPRSKVAKSLQSFDNANELSK 182


>gi|328786694|ref|XP_397483.4| PREDICTED: hypothetical protein LOC414048 [Apis mellifera]
          Length = 1219

 Score = 35.4 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 101 SQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKLI 160
           SQN +   KN++NNI + ++++KE    DIN + + + E+ I + N +K  +       I
Sbjct: 483 SQNVKRK-KNSSNNIENDVSIIKEN-SDDINIYHSLSKESDILINNKIKETLDQLNSDSI 540

Query: 161 PPRKNIN---------NLKDTNHRLKIKNNQE 183
             +K IN         + +D+  RL+I N++E
Sbjct: 541 KIKKEINKEDESFDELSDEDSRDRLEIDNSEE 572


>gi|332519820|ref|ZP_08396284.1| efflux transporter, RND family, MFP subunit [Lacinutrix algicola
           5H-3-7-4]
 gi|332044379|gb|EGI80573.1| efflux transporter, RND family, MFP subunit [Lacinutrix algicola
           5H-3-7-4]
          Length = 378

 Score = 35.4 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 82  RLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTD-----------I 130
           +L +  + +N   +LI++ +     S ++A +N+ + IA +   LR D           +
Sbjct: 83  KLFKPGQEYNRGETLISLDAAEYYASVQSAKSNLYNSIAAIMPDLRLDFKDVYQKWQTYL 142

Query: 131 NTFDNTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKI 178
           N FD      K+P  +N K N  +  + +I    N+ NL+    + +I
Sbjct: 143 NNFDLNKTTPKLPEVSNEKENYFITGRGIISAYYNVKNLEQRLAKYRI 190


>gi|328714558|ref|XP_001944844.2| PREDICTED: hypothetical protein LOC100168206 [Acyrthosiphon pisum]
          Length = 3806

 Score = 35.0 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 135  NTNLETKIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLK 177
            +T+ E ++P P+ LK  + +K KK+ P     N LK+ N   K
Sbjct: 2858 DTDYEPQLPSPSQLKYKILIKNKKIAPLESEANRLKNNNSSTK 2900


>gi|326405796|gb|ADZ62867.1| Putative glycerophosphoryl diester phosphodiesterase [Lactococcus
           lactis subsp. lactis CV56]
          Length = 703

 Score = 35.0 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 85  EQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLET---- 140
           +Q+ + N+  SL+     N +       N+  D I+   E++  D N+FD+ N ET    
Sbjct: 49  DQEDSSNISLSLVQESKLNDEADSTLKTNSSTDQISN-DEKINQD-NSFDHGNSETGQDV 106

Query: 141 KIPLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNIHHKKNKPRL 196
           K+P  N++      KE+         +NL   +  L+ +  QE  NI   + KP +
Sbjct: 107 KVPESNSMDN----KEQNSTSYTTYDSNLTQDSKILESQTKQETNNISETEKKPEV 158


>gi|12045116|ref|NP_072927.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|255660357|ref|ZP_05405766.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|2494193|sp|Q49405|DPO3A_MYCGE RecName: Full=DNA polymerase III subunit alpha
 gi|1045954|gb|AAC71482.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|166078627|gb|ABY79245.1| DNA polymerase III, alpha subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 874

 Score = 35.0 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 115 ILDHIALLKERLRTDINTFDNTNLETKIPLPNNLKPNVCVKEKKL---IPPRKNIN---- 167
           +L+H    K++ +  I T + + +E   PL N  +PN  ++ KK+   +   K IN    
Sbjct: 724 LLNHFQSSKDKQKLIIRTLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKGINDRYI 783

Query: 168 -NLKDTNHRLKIKNNQEIKNI 187
            NL+   H ++ +NN ++ ++
Sbjct: 784 QNLQKVQHLIQTQNNLQLTDV 804


>gi|83319343|ref|YP_424108.1| oligopeptide ABC transporter, oligopeptide-binding protein,
           putative [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283229|gb|ABC01161.1| oligopeptide ABC transporter, oligopeptide-binding protein,
           putative [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 984

 Score = 34.7 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 133 FDNTNLETKIPLPN--NLKPNVCVKEKKLIPPRKNINNLK----DTNHRLKIKNNQEIKN 186
           FD    ET I LPN   L PN+ V+++KLIP RK +   K    D   +   + ++ +K 
Sbjct: 331 FDPNADETIIMLPNLERLNPNLSVEQRKLIPQRKAVKIKKYLFTDPRQKFSKEFDELLKK 390

Query: 187 IHHKKNK 193
               KNK
Sbjct: 391 SKELKNK 397


>gi|332826761|gb|EGJ99578.1| hypothetical protein HMPREF9455_04074 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1476

 Score = 34.7 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 13  LKLHKNIMSKGKINESFWYIRTLF--PYLSHQIHKALMSISSGIILILSPTDCTANTANI 70
           L L   ++S  KI  S+  I   F     +  +  A MSI SG + I +P D      N+
Sbjct: 637 LNLPVTVLSTSKIIGSYNNINDRFNLEIFAPSVKAAGMSIQSGYVAIRNPHDTIDAKVNV 696

Query: 71  LIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQESPKNANNNILDHIALLK---ERLR 127
           LI  +K       +  K   NL  + I++ +   Q++  N + + L    L K   E LR
Sbjct: 697 LIAGKKNTINDVAINAKVKDNLINTNISLVNTGAQKAMGNFSISTL----LTKNEAEPLR 752

Query: 128 TDINTF 133
            DINT 
Sbjct: 753 IDINTL 758


>gi|320168470|gb|EFW45369.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 546

 Score = 34.7 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 59  SPTDCTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPS--QNKQESPKNANNNIL 116
           +P+D   +    LI SRK  D H  +E+++ +N+   ++ + S   N +  PK +  +IL
Sbjct: 449 APSDYDPDDIQTLIKSRKKKDNHNAIERRRRYNINDRIVELGSLLPNAEIDPKASKGSIL 508

Query: 117 ----DHIALLKERLRTDINTFDNTNLETKIP 143
               D+I  L++  R+       T    ++P
Sbjct: 509 KRSVDYIKYLQDINRSLSEKLAQTGTVVELP 539


>gi|300870969|ref|YP_003785840.1| transporter [Brachyspira pilosicoli 95/1000]
 gi|300688668|gb|ADK31339.1| transporter [Brachyspira pilosicoli 95/1000]
          Length = 446

 Score = 34.3 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 88  KNHNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLPNN 147
           K+  L   L     +NKQ   KN NNNI D   ++K  L   I   +++N E        
Sbjct: 191 KHSFLSILLFEQQDKNKQYISKNINNNIFD---VIKYFLSMSIYIKNSSNTE-------- 239

Query: 148 LKPNVCVKEKKLIPPRKN----INNLKDTNHRLKIKNN------QEIKNIHHKKNK 193
            K  + V +KK IP   N    IN  +  NH  KI NN       +IK +++KK +
Sbjct: 240 -KGKISV-DKKFIPKMDNGSIKINEEEKLNHTEKILNNFFTSIYSDIKQVYYKKER 293


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.318    0.134    0.390 

Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,880,619,649
Number of Sequences: 14124377
Number of extensions: 79056716
Number of successful extensions: 258226
Number of sequences better than 10.0: 599
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 570
Number of HSP's that attempted gapping in prelim test: 256345
Number of HSP's gapped (non-prelim): 2351
length of query: 199
length of database: 4,842,793,630
effective HSP length: 132
effective length of query: 67
effective length of database: 2,978,375,866
effective search space: 199551183022
effective search space used: 199551183022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)