RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780682|ref|YP_003065095.1| hypothetical protein
CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)



>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
           structure; 3.30A {Thermus aquaticus} (D:135-193)
          Length = 59

 Score = 27.0 bits (59), Expect = 1.7
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 3/22 (13%)

Query: 108 PKNANNNILDHIALLKERLRTD 129
           PK A   +LD + + K +L TD
Sbjct: 3   PKGA---VLDGVPVEKRQLLTD 21


>2o3o_A YYCI protein; two-component system, signaling protein; 2.89A
           {Bacillus subtilis} (A:)
          Length = 254

 Score = 26.1 bits (57), Expect = 3.9
 Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 6/45 (13%)

Query: 143 PLPNNLKPNVCVKEKKLIPPRKNINNLKDTNHRLKIKNNQEIKNI 187
                 K     +++ LI     +  L   N    +K    +K+ 
Sbjct: 161 TTLETFKQI---QKESLITEXDAVELLYYQNQ---LKEYSTVKSC 199


>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase,
           quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ
           IMD; 1.23A {Pichia pastoris} (A:268-737)
          Length = 470

 Score = 25.7 bits (56), Expect = 4.1
 Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 10/89 (11%)

Query: 118 HIALLKERLRTDI----NTFDNTNLETKIPLPNNLKPNV-----CVKEKKLIPPRKNINN 168
           H  +L  ++  D+    N      ++    +     P        +  +       N  N
Sbjct: 218 HDHVLNYKVDLDVGGTKNRASQYVMKDV-DVEYPWAPGTVYNTKQIAREVFENEDFNGIN 276

Query: 169 LKDTNHRLKIKNNQEIKNIHHKKNKPRLH 197
             +    + +  + E  N         + 
Sbjct: 277 WPENGQGILLIESAEETNSFGNPRAYNIM 305


>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF;
           1.85A {Campylobacter jejuni} PDB: 2p56_A (A:)
          Length = 288

 Score = 25.6 bits (56), Expect = 4.6
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 90  HNLQYSLINIPSQNKQESPKNANNNILDHIALLKERLRTDINTF---DNTNLETKIPLPN 146
             +  ++  I    K   P N ++   D  AL   +    +N +   D++ L    PL  
Sbjct: 183 EAMSTNIKTIFPGIKDFKPSNCHSKEYDIEALKLLKSIYKVNIYALCDDSILANHFPLSI 242

Query: 147 NLKPNVCVKEKK-------LIPPR 163
           N+  N  ++ K        L+   
Sbjct: 243 NINNNFTLENKHNNSINDILLTDN 266


>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal
           binding, hydrolase; 1.30A {Bacillus subtilis} (A:)
          Length = 188

 Score = 25.1 bits (54), Expect = 6.5
 Identities = 17/96 (17%), Positives = 38/96 (39%)

Query: 6   LFLIKHKLKLHKNIMSKGKINESFWYIRTLFPYLSHQIHKALMSISSGIILILSPTDCTA 65
              +K+KL  +   +  G++N    Y    F   S ++ +   +  +G+IL+       +
Sbjct: 23  YADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQS 82

Query: 66  NTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPS 101
                 +   ++ID+HR+   +    L Y    +  
Sbjct: 83  IKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGC 118


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,407,236
Number of extensions: 58826
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 17
Length of query: 199
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 115
Effective length of database: 2,116,429
Effective search space: 243389335
Effective search space used: 243389335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)