RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter asiaticus str. psy62] (199 letters) >d1flca1 b.19.1.3 (A:151-306) Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein HEF1 {Influenza C virus [TaxId: 11552]} Length = 156 Score = 24.7 bits (53), Expect = 6.1 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 8/72 (11%) Query: 95 SLIN-----IPSQNKQESPKNANNNILDHIALLKERLRTDINTFDNTNLETKIPLPNNLK 149 SL+N IP Q + N NN+ L + AL + ++ N NL LP Sbjct: 3 SLVNALDKTIPLQVTAGTAGNCNNSFLKNPALYTQEVKPSENKCGKENL-AFFTLPTQFG 61 Query: 150 PNVCVKEKKLIP 161 C + L+ Sbjct: 62 TYEC--KLHLVA 71 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.134 0.390 Gapped Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 710,352 Number of extensions: 31079 Number of successful extensions: 78 Number of sequences better than 10.0: 1 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 25 Length of query: 199 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 118 Effective length of database: 1,295,466 Effective search space: 152864988 Effective search space used: 152864988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.6 bits)