HHsearch alignment for GI: 254780683 and conserved domain: PRK10871
>PRK10871 nlpD lipoprotein NlpD; Provisional.
Probab=99.97 E-value=3.8e-31 Score=184.99 Aligned_cols=81 Identities=35% Similarity=0.714 Sum_probs=78.0
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECCEECCHHHHHH
Q ss_conf 59996069865511999998998899841156344112002203124899805788888569999978689805269875
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAIAMDPIKFLE 80 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g~~vdP~~~l~ 80 (84)
T Consensus 294 ~VvyaG~~l~gyGnliiIkH~~~~lsaYahn~~~lVkeg~~V~~Gq~Ia~~G~tg~~~-~~LHFEiR~~g~pvdP~~yLP 372 (374)
T PRK10871 294 RVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSS-TRLHFEIRYKGKSVNPLRYLP 372 (374)
T ss_pred EEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCEEEEECCCCCCC-CEEEEEEEECCEECCHHHHCC
T ss_conf 8999247878776289998499867861676626678889988999898643789998-308999977998669489764
Q ss_pred CC
Q ss_conf 03
Q gi|254780683|r 81 EK 82 (84)
Q Consensus 81 ~k 82 (84)
T Consensus 373 kR 374 (374)
T PRK10871 373 QR 374 (374)
T ss_pred CC
T ss_conf 99