HHsearch alignment of GI: 254780683 and MMDB domain: 2a6h_C_593-659
>2a6h_C (C:593-659) DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=91.04 E-value=0.26 Score=27.02 Aligned_cols=43 Identities=30% Similarity=0.457 Sum_probs=29.3
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEEC------------CCCCCCCCCEEEECCEEEE
Q ss_conf 599960698655119999989988998411------------5634411200220312489
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSH------------IDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~h------------l~~i~v~~G~~V~~G~~IG 49 (84)
+|.|+.. ..|+|...++-...|.= ..+..|++||+|++||+|+
T Consensus 10 ~V~yvd~------~~I~i~~~~~~~~~Y~L~kf~RSNq~TcinQrPiV~~G~~V~kG~ilA 64 (67)
T 2a6h_C 10 EVAKVDG------NRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLA 64 (67)
T ss_dssp EEEEECS------SBEEEEETTTEEECCBCCCSEECTTSCEECCEECCCSSCCBCTTCEEE
T ss_pred CCCEECC------CEEEEECCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEECCCEEC
T ss_conf 4210126------438997477863112453545553335742687311473664374634