Query gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 84
No_of_seqs 112 out of 5508
Neff 6.5
Searched_HMMs 33803
Date Wed Jun 1 14:48:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780683.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1qwy_A Peptidoglycan hydrolas 99.9 3.8E-25 1.1E-29 152.9 7.0 82 1-82 123-209 (209)
2 >2gu1_A Zinc peptidase; alpha/ 99.9 8.4E-24 2.5E-28 145.9 7.2 81 1-82 47-127 (156)
3 >2hsi_A Putative peptidase M23 99.8 6.6E-21 2E-25 130.5 6.9 68 1-69 85-152 (152)
4 >3csq_A Morphogenesis protein 99.8 2.6E-21 7.8E-26 132.7 4.0 82 1-82 47-138 (169)
5 >3it5_A Protease LASA; metallo 99.8 2.6E-20 7.7E-25 127.4 8.8 67 11-77 62-136 (146)
6 >1ci3_M Protein (cytochrome F) 91.2 0.39 1.2E-05 26.1 4.8 47 2-49 11-59 (62)
7 >2a6h_C DNA-directed RNA polym 91.0 0.26 7.7E-06 27.0 3.8 43 1-49 10-64 (67)
8 >2jxm_B Cytochrome F; copper, 90.6 0.38 1.1E-05 26.1 4.3 39 11-49 18-58 (61)
9 >1q90_A Apocytochrome F; membr 89.5 0.38 1.1E-05 26.1 3.6 37 13-49 23-61 (65)
10 >1e2w_A Cytochrome F; electron 88.5 1.1 3.2E-05 23.8 5.3 37 13-49 35-73 (77)
11 >3fpp_A Macrolide-specific eff 88.4 0.2 5.8E-06 27.7 1.5 25 30-54 12-36 (161)
12 >1f3z_A EIIA-GLC, glucose-spec 88.4 0.62 1.8E-05 25.0 4.0 42 11-53 65-117 (161)
13 >2gpr_A Glucose-permease IIA c 88.1 0.9 2.7E-05 24.2 4.7 42 11-53 60-112 (154)
14 >1vf7_A Multidrug resistance p 87.6 0.26 7.6E-06 27.1 1.6 25 30-54 13-37 (133)
15 >1ax3_A Iiaglc, glucose permea 86.8 1.2 3.7E-05 23.4 4.8 43 10-53 64-117 (162)
16 >1dcz_A Transcarboxylase 1.3S 86.6 0.3 8.9E-06 26.7 1.5 27 29-55 17-43 (77)
17 >2d5d_A Methylmalonyl-COA deca 86.2 0.37 1.1E-05 26.2 1.9 27 29-55 14-40 (74)
18 >1hcz_A Cytochrome F; electron 86.1 1.8 5.2E-05 22.6 5.3 47 2-49 11-60 (63)
19 >3hbl_A Pyruvate carboxylase; 85.1 0.51 1.5E-05 25.5 2.1 27 29-55 18-44 (82)
20 >2f1m_A Acriflavine resistance 84.2 0.3 9E-06 26.7 0.6 26 29-54 11-36 (146)
21 >2a6h_D DNA-directed RNA polym 83.4 1.4 4.3E-05 23.1 3.8 36 15-50 47-84 (119)
22 >1z6h_A Biotin/lipoyl attachme 83.1 0.62 1.8E-05 25.0 1.9 27 29-55 8-34 (72)
23 >1bdo_A Acetyl-COA carboxylase 82.2 0.82 2.4E-05 24.4 2.2 27 29-55 20-46 (80)
24 >2k32_A A; NMR {Campylobacter 81.9 0.74 2.2E-05 24.6 1.9 26 29-54 10-35 (116)
25 >2qf7_A Pyruvate carboxylase p 81.6 0.58 1.7E-05 25.2 1.3 27 29-55 18-44 (79)
26 >3i4l_A A-type ATP synthase ca 81.4 0.9 2.7E-05 24.2 2.1 22 34-55 21-42 (88)
27 >1iyu_A E2P, dihydrolipoamide 81.4 3.4 0.0001 21.1 5.1 23 32-54 16-38 (79)
28 >1qjo_A Dihydrolipoamide acety 80.6 1 3E-05 23.9 2.2 27 30-56 16-42 (80)
29 >3bg3_A Pyruvate carboxylase, 79.5 0.74 2.2E-05 24.6 1.2 27 29-55 15-41 (75)
30 >2ejm_A Methylcrotonoyl-COA ca 79.3 1.2 3.5E-05 23.5 2.2 22 32-53 26-47 (99)
31 >2jku_A Propionyl-COA carboxyl 78.5 0.67 2E-05 24.9 0.7 27 29-55 34-60 (94)
32 >2auk_A DNA-directed RNA polym 78.4 3.4 9.9E-05 21.2 4.3 37 14-50 42-80 (82)
33 >2dn8_A Acetyl-COA carboxylase 78.0 1.2 3.4E-05 23.6 1.8 24 31-54 28-51 (100)
34 >1ghj_A E2, E2, the dihydrolip 77.6 4.4 0.00013 20.5 4.7 27 29-55 16-42 (79)
35 >2dnc_A Pyruvate dehydrogenase 77.1 1.4 4.2E-05 23.1 2.0 27 29-55 22-48 (98)
36 >3crk_C Dihydrolipoyllysine-re 77.0 1.4 4.3E-05 23.1 2.1 28 29-56 20-47 (87)
37 >3cdx_A Succinylglutamatedesuc 76.9 1.1 3.4E-05 23.6 1.5 24 31-54 12-35 (89)
38 >2kcc_A Acetyl-COA carboxylase 76.6 1.5 4.4E-05 23.0 2.1 23 32-54 17-39 (84)
39 >1k8m_A E2 component of branch 75.8 2 6E-05 22.3 2.6 25 31-55 58-82 (93)
40 >3iyd_D DNA-directed RNA polym 75.3 1.2 3.5E-05 23.6 1.3 38 13-50 43-82 (83)
41 >1gjx_A Pyruvate dehydrogenase 75.3 1.1 3.4E-05 23.6 1.2 25 31-55 18-42 (81)
42 >1vf5_C Cytochrome F; photosyn 75.2 0.29 8.7E-06 26.7 -1.9 36 13-48 22-59 (60)
43 >2dne_A Dihydrolipoyllysine-re 75.2 1.8 5.3E-05 22.6 2.2 28 28-55 21-48 (108)
44 >3gqb_A V-type ATP synthase al 75.1 1.5 4.5E-05 23.0 1.8 22 34-55 15-36 (77)
45 >2auk_A DNA-directed RNA polym 75.1 1.5 4.5E-05 23.0 1.8 41 14-54 55-106 (108)
46 >3e3x_A BIPA; MCSG,PSI2, struc 74.9 1.6 4.6E-05 22.9 1.8 41 15-55 7-52 (71)
47 >1y8o_B Dihydrolipoyllysine-re 73.8 2 5.8E-05 22.4 2.1 27 29-55 42-68 (128)
48 >2k7v_A Dihydrolipoyllysine-re 71.5 3.2 9.4E-05 21.3 2.7 28 29-56 48-75 (85)
49 >3h9i_A Cation efflux system p 71.0 1.7 5.1E-05 22.7 1.2 25 30-54 13-38 (123)
50 >2qj8_A MLR6093 protein; NP_10 69.9 1.9 5.6E-05 22.4 1.3 25 29-53 120-144 (187)
51 >1uou_A Thymidine phosphorylas 65.6 3.3 9.6E-05 21.2 1.8 22 34-55 47-68 (91)
52 >3iyd_C DNA-directed RNA polym 65.2 2.6 7.5E-05 21.8 1.2 22 33-54 68-89 (96)
53 >2dsj_A Pyrimidine-nucleoside 64.0 3.6 0.00011 21.0 1.7 22 34-55 55-76 (97)
54 >2tpt_A Thymidine phosphorylas 63.7 2.9 8.7E-05 21.5 1.2 22 33-54 55-76 (100)
55 >1pmr_A Dihydrolipoyl succinyl 63.4 3.6 0.00011 21.0 1.6 27 29-55 17-43 (80)
56 >1brw_A PYNP, protein (pyrimid 61.8 4.2 0.00012 20.6 1.8 23 34-56 54-76 (97)
57 >1hqm_D DNA-directed RNA polym 58.4 2.5 7.4E-05 21.8 0.1 35 14-48 19-55 (55)
58 >3e7w_A D-alanine--poly(phosph 56.3 11 0.00032 18.4 3.1 40 39-78 3-45 (143)
59 >1zy8_K Pyruvate dehydrogenase 51.9 3.5 0.0001 21.0 0.0 24 30-53 56-79 (229)
60 >3dva_I Dihydrolipoyllysine-re 49.9 3.9 0.00012 20.8 0.0 23 32-54 20-42 (428)
61 >3h5q_A PYNP, pyrimidine-nucle 48.5 9.3 0.00027 18.8 1.7 22 34-55 205-226 (247)
62 >2a6h_D DNA-directed RNA polym 41.3 4 0.00012 20.7 -1.1 30 26-55 4-33 (55)
63 >2a6h_D DNA-directed RNA polym 37.9 7.7 0.00023 19.3 -0.1 35 15-49 168-204 (231)
64 >3hgb_A Glycine cleavage syste 31.4 27 0.00081 16.3 1.9 23 34-56 65-87 (155)
65 >2j9i_A Glutamate-ammonia liga 31.0 32 0.00094 16.0 2.2 18 56-73 36-53 (168)
66 >1zko_A Glycine cleavage syste 29.6 32 0.00096 15.9 2.0 23 34-56 51-73 (136)
67 >2iw3_A Elongation factor 3A; 25.4 35 0.001 15.8 1.6 40 14-56 16-56 (237)
68 >3gnn_A Nicotinate-nucleotide 24.9 39 0.0012 15.5 1.8 20 34-53 90-109 (133)
69 >3fmc_A Putative succinylgluta 24.1 29 0.00087 16.2 1.0 25 29-53 10-34 (76)
70 >1yw4_A Succinylglutamate desu 23.2 21 0.00064 16.9 0.2 22 33-54 276-297 (341)
71 >2b7n_A Probable nicotinate-nu 22.4 44 0.0013 15.2 1.6 20 33-52 61-80 (128)
72 >2ns0_A Hypothetical protein; 21.8 39 0.0012 15.5 1.3 15 64-78 59-73 (85)
73 >1yw6_A Succinylglutamate desu 20.4 53 0.0016 14.8 1.7 25 31-55 272-296 (335)
No 1
>>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} (A:83-291)
Probab=99.91 E-value=3.8e-25 Score=152.93 Aligned_cols=82 Identities=32% Similarity=0.501 Sum_probs=74.2
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEE-EECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECC----EECCH
Q ss_conf 599960698655119999989988998-4115634411200220312489980578888856999997868----98052
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTV-YSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNA----IAMDP 75 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~-Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g----~~vdP 75 (84)
+|++++++....|++|+|+|++++.++ |+|++++.|++||.|++||.||++|+||++++|||||||++++ +++||
T Consensus 123 ~V~~~~~~~~~gg~~V~i~h~~~~~t~~y~~~~~~~V~~G~~V~~Gq~IG~~G~tg~s~gpHLHfei~~~g~~~~~~vdP 202 (209)
T 1qwy_A 123 TVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDP 202 (209)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSSEEEEEEEESEECCCTTCEECTTCEEEECCCCSSCSSSEEEEEEEESEESGGGEECC
T ss_pred EEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEECCC
T ss_conf 99998874678986999984899889997878825668889999789999868889989866899999899179877286
Q ss_pred HHHHHCC
Q ss_conf 6987503
Q gi|254780683|r 76 IKFLEEK 82 (84)
Q Consensus 76 ~~~l~~k 82 (84)
++||++|
T Consensus 203 ~~~l~~r 209 (209)
T 1qwy_A 203 TSYLQSR 209 (209)
T ss_dssp HHHHC--
T ss_pred HHHHHCC
T ss_conf 9970159
No 2
>>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:206-361)
Probab=99.89 E-value=8.4e-24 Score=145.86 Aligned_cols=81 Identities=35% Similarity=0.492 Sum_probs=76.7
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECCEECCHHHHHH
Q ss_conf 59996069865511999998998899841156344112002203124899805788888569999978689805269875
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAIAMDPIKFLE 80 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g~~vdP~~~l~ 80 (84)
.|+++++. .++|++|+|+|++++.++|+||+++.|++||+|++||+||++|+++++.+||||||++++++++||+.||+
T Consensus 47 ~V~~~~~~-~~~g~~V~i~h~~g~~~~y~~l~~~~v~~G~~V~~G~~IG~~g~~g~~~~~hLHfei~~~g~~vdP~~~l~ 125 (156)
T 2gu1_A 47 KVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTGPHLHFEVLVRNRPVDAMKADL 125 (156)
T ss_dssp EEEEEEEE-TTTEEEEEEECSSSEEEEEEEESEECCCTTCEECTTCEEEECCCCSSCSSCCEEEEEEETTEEECTTCSSC
T ss_pred EEEEECCC-CCCCCEEEEECCCCEEEEEECCCCCEECCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCEECCCCCCCC
T ss_conf 35761247-76564599974997478883343212188999997998997768899898568999998998858862468
Q ss_pred CC
Q ss_conf 03
Q gi|254780683|r 81 EK 82 (84)
Q Consensus 81 ~k 82 (84)
..
T Consensus 126 ~~ 127 (156)
T 2gu1_A 126 PI 127 (156)
T ss_dssp C-
T ss_pred CC
T ss_conf 89
No 3
>>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} (A:116-267)
Probab=99.83 E-value=6.6e-21 Score=130.55 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=64.8
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEEC
Q ss_conf 599960698655119999989988998411563441120022031248998057888885699999786
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKN 69 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~ 69 (84)
.|+++++. .++|++|+|+|++++.+.|+||+++.|++||.|++||+||++|++|.+.+||||||||+|
T Consensus 85 ~V~~~~~~-~~~g~~v~i~h~~g~~t~Y~~l~~v~V~~G~~V~~Gq~IG~~G~~g~s~~phLHfev~~n 152 (152)
T 2hsi_A 85 KVILIGDY-FFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATGPHMHWNVSLN 152 (152)
T ss_dssp EEEEEEEE-TTTEEEEEEEEETTEEEEEEEESEECSCTTCEECTTCEEEECCCTTTCSSCCEEEEEEET
T ss_pred EEEECCCC-CCCCEEEEEECCCCCEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEEC
T ss_conf 03101345-667439999769973688616561354889999989989985589999986799999989
No 4
>>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29} (A:166-334)
Probab=99.83 E-value=2.6e-21 Score=132.66 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=71.5
Q ss_pred CEEEECCCC--CCCCEEEEEECCCC----EEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECCE---
Q ss_conf 599960698--65511999998998----899841156344112002203124899805788888569999978689---
Q gi|254780683|r 1 MVIYVGNDL--VELGNTILIRHDDS----IVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAI--- 71 (84)
Q Consensus 1 VVv~~g~~~--~~~G~~V~I~h~~g----~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g~--- 71 (84)
+|++++++. .++|++|+|+|++| |.+.|+||+++.|++||+|++||+||++|++|++++||||||||+++.
T Consensus 47 ~V~~~~~~~~~~~~G~~V~i~h~~g~~~~y~~~y~~~~~~~V~~G~~V~~G~~IG~~G~~g~~~~pHLHfei~~~~~~~~ 126 (169)
T 3csq_A 47 TCVWRGDASAYLAWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGDLMGHTGIGGNVTGDHWHFNVIDGKEYQG 126 (169)
T ss_dssp EEEEEETTTTEEEEEESSCEECTTSCEECEEEEEECCSSCCCCTTCEECTTSEEEECBCCC----CBEEEEEEESSCCCC
T ss_pred EEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCCCCC
T ss_conf 99998636776543776999967998579999999456256899699789998995238989999658999998981675
Q ss_pred -ECCHHHHHHCC
Q ss_conf -80526987503
Q gi|254780683|r 72 -AMDPIKFLEEK 82 (84)
Q Consensus 72 -~vdP~~~l~~k 82 (84)
.+||++||+..
T Consensus 127 ~~vdP~~~l~~~ 138 (169)
T 3csq_A 127 WTKKPDSCLAGT 138 (169)
T ss_dssp EEESSSEEESSC
T ss_pred HHHCCCCCCCCC
T ss_conf 110655346789
No 5
>>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A* (A:1-134,A:171-182)
Probab=99.82 E-value=2.6e-20 Score=127.41 Aligned_cols=67 Identities=25% Similarity=0.373 Sum_probs=61.4
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEEC--------CCCCCCCCEEEEEEEECCEECCHHH
Q ss_conf 551199999899889984115634411200220312489980--------5788888569999978689805269
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSG--------KSGNAQHPQVHFELRKNAIAMDPIK 77 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg--------~tg~~~g~hLhfei~~~g~~vdP~~ 77 (84)
..|++|+|+|++++.|+|+||+++.|++||+|++||+||+++ ++|.+++||||||||++++++||..
T Consensus 62 ~gG~~ViI~h~~g~~t~Y~hl~~~~V~~G~~V~~G~~IG~~g~~~~~~~G~~G~~~~pHLHfeir~~g~~vdP~~ 136 (146)
T 3it5_A 62 LSRCQVRVTHPSGWATNYYHMDQIQVSNGQQVSADTKLGVYAGNINTALCEGGSSTGPHLHFSLLYNGAFVSLAF 136 (146)
T ss_dssp EETTEEEEECTTSEEEEEESEESCCCCTTCEECTTCEEEEECSSHHHHTTTSCCCSSSCEEEEEEETTEECCCTT
T ss_pred ECCEEEEEEECCCCCCCEECCEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCC
T ss_conf 527899997288346446413003312674414883886714766653157777688678999998998969976
No 6
>>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit; HET: HEM; 1.90A {Phormidium laminosum} (M:170-231)
Probab=91.16 E-value=0.39 Score=26.09 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=32.9
Q ss_pred EEEECCCCCCCCEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEE
Q ss_conf 9996069865511999998998899841--15634411200220312489
Q gi|254780683|r 2 VIYVGNDLVELGNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 2 Vv~~g~~~~~~G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG 49 (84)
|.+.... ..-...|+|+..+|-...|. .-..+.|+.||.|++||.|-
T Consensus 11 V~~i~~~-~~~~~~I~i~~~~Ge~~~y~ip~g~~l~V~~Gd~V~~Gq~Lt 59 (62)
T 1ci3_M 11 ITAIAKA-DDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGAALT 59 (62)
T ss_dssp EEEEEEC-TTSCEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBSB
T ss_pred EEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEECCCCCCC
T ss_conf 9885775-889779999899998989966899804771799982898122
No 7
>>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (C:593-659)
Probab=91.04 E-value=0.26 Score=27.02 Aligned_cols=43 Identities=30% Similarity=0.457 Sum_probs=29.3
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEEC------------CCCCCCCCCEEEECCEEEE
Q ss_conf 599960698655119999989988998411------------5634411200220312489
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSH------------IDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~h------------l~~i~v~~G~~V~~G~~IG 49 (84)
+|.|+.. ..|+|...++-...|.= ..+..|++||+|++||+|+
T Consensus 10 ~V~yvd~------~~I~i~~~~~~~~~Y~L~kf~RSNq~TcinQrPiV~~G~~V~kG~ilA 64 (67)
T 2a6h_C 10 EVAKVDG------NRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLA 64 (67)
T ss_dssp EEEEECS------SBEEEEETTTEEECCBCCCSEECTTSCEECCEECCCSSCCBCTTCEEE
T ss_pred CCCEECC------CEEEEECCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEECCCEEC
T ss_conf 4210126------438997477863112453545553335742687311473664374634
No 8
>>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} (B:171-231)
Probab=90.58 E-value=0.38 Score=26.13 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=30.6
Q ss_pred CCCEEEEEECCCCEEEEEEC--CCCCCCCCCEEEECCEEEE
Q ss_conf 55119999989988998411--5634411200220312489
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSH--IDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~h--l~~i~v~~G~~V~~G~~IG 49 (84)
.-+..|+|...+|-...|.= -.++.|+.||.|++||.|-
T Consensus 18 ~~~~~I~I~~~dg~~~~y~vp~g~~l~V~eGd~V~~G~~Lt 58 (61)
T 2jxm_B 18 GFGFDVTIQPEDGDAVVTSILPGPELIVAVGDTVEAGQLLT 58 (61)
T ss_dssp SSEEEEEEECTTSCCEEEEECSSSCBCCCTTCEECTTCBSB
T ss_pred CCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC
T ss_conf 99669999999998999973899816878899983898123
No 9
>>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} (A:169-233)
Probab=89.51 E-value=0.38 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.3
Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEE
Q ss_conf 11999998998899841--15634411200220312489
Q gi|254780683|r 13 GNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG 49 (84)
...|+|...+|-...|. .-..+.|+.||.|++||.|-
T Consensus 23 ~~~I~I~~~dge~~~y~ip~~~~l~V~eGd~V~~Gq~Lt 61 (65)
T 1q90_A 23 GFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLT 61 (65)
T ss_dssp CEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBSB
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC
T ss_conf 589999889998899974899978976899983898034
No 10
>>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} (A:157-233)
Probab=88.46 E-value=1.1 Score=23.76 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.4
Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEE
Q ss_conf 11999998998899841--15634411200220312489
Q gi|254780683|r 13 GNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG 49 (84)
...|+|...+|....|. .-..+.|+.||.|++||+|.
T Consensus 35 ~~~I~I~~~~ge~~~y~ip~~~~l~V~~Gd~V~~G~~Lt 73 (77)
T 1e2w_A 35 GFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLT 73 (77)
T ss_dssp CEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBCB
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC
T ss_conf 579999868998987842899858860798785698455
No 11
>>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} (A:30-190)
Probab=88.41 E-value=0.2 Score=27.65 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 1563441120022031248998057
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
-+.++.|++||.|++||+|+.+.+.
T Consensus 12 ~V~~i~v~~Gd~Vk~Gq~L~~ld~~ 36 (161)
T 3fpp_A 12 QLKTLSVAIGDKVKKDQLLGVIDPE 36 (161)
T ss_dssp EEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEECCCCCEECCCCEEEEECCH
T ss_conf 9999998995997899989998709
No 12
>>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} (A:)
Probab=88.36 E-value=0.62 Score=25.02 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCCEEEEEECCCCEEEEEECC--C---------CCCCCCCEEEECCEEEEEECC
Q ss_conf 551199999899889984115--6---------344112002203124899805
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSHI--D---------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~hl--~---------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
..+..+.|+..+|... .-|+ + +..|++||.|++||+|.++..
T Consensus 65 ~T~HAigi~~~~G~ei-LiHiGidTv~l~g~gF~~~v~~Gd~V~~G~~L~~~D~ 117 (161)
T 1f3z_A 65 ETNHAFSIESDSGVEL-FVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp TTSSEEEEEETTSCEE-EEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CCCCEEEEEECCCCEE-EEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf 7896999993998799-9996636543289643899738999989999999869
No 13
>>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} (A:)
Probab=88.13 E-value=0.9 Score=24.18 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCCEEEEEECCCCEEEEEECC--C---------CCCCCCCEEEECCEEEEEECC
Q ss_conf 551199999899889984115--6---------344112002203124899805
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSHI--D---------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~hl--~---------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
..+..+.|+..+|.. +.-|+ + +..|++||+|++||+|.++..
T Consensus 60 ~T~HAi~i~~~~G~e-iLiHiGidTv~L~g~gF~~~v~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 60 PTKHAFGIQTKSGVE-ILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp TTCSEEEEECTTSCE-EEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred CCCCEEEEECCCCCE-EEEEECCCHHCCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf 899699999299989-99997424301489515899748999918999999859
No 14
>>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} (A:41-173)
Probab=87.58 E-value=0.26 Score=27.06 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.5
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 1563441120022031248998057
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
-+.++.|++||.|++||+|.+..++
T Consensus 13 ~I~~i~v~~G~~V~kGq~L~~ld~~ 37 (133)
T 1vf7_A 13 IILKRLFKEGSDVKAGQQLYQIDPA 37 (133)
T ss_dssp EEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEEEEECCCCCEECCCCEEEEECCH
T ss_conf 9999988993998899989998478
No 15
>>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} (A:)
Probab=86.80 E-value=1.2 Score=23.43 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCCEEEEEECCCCEEEEEECC--C---------CCCCCCCEEEECCEEEEEECC
Q ss_conf 6551199999899889984115--6---------344112002203124899805
Q gi|254780683|r 10 VELGNTILIRHDDSIVTVYSHI--D---------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 10 ~~~G~~V~I~h~~g~~t~Y~hl--~---------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
...+..+.|+..+|.. +.-|+ + +..|++||.|++||+|.++..
T Consensus 64 ~~T~HAi~i~~~~G~e-vLiHiGidTv~L~g~gF~~~v~~Gd~V~~G~~L~~~D~ 117 (162)
T 1ax3_A 64 FPTKHAIGLQSDGGRE-ILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp CSSSSEEEEESSSSCE-EEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred CCCCCEEEEECCCCCE-EEEEEEECCCCCCCCEEEEEECCCCEECCCCEEEEECH
T ss_conf 2799799999799979-99998304201489616899868999948989778789
No 16
>>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin; NMR {Propionibacterium freudenreichiisubsp} (A:)
Probab=86.57 E-value=0.3 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=21.7
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.+.++.|++||.|++||.|+++-...
T Consensus 17 G~i~~~~V~~Gd~V~~g~~l~~ie~~k 43 (77)
T 1dcz_A 17 GTVSKILVKEGDTVKAGQTVLVLEAMK 43 (77)
T ss_dssp CEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred CEEEEEECCCCCEEECCCEEEEEECCC
T ss_conf 199999947999996898799998178
No 17
>>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A (A:)
Probab=86.24 E-value=0.37 Score=26.20 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.4
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.+.++.+++||.|++||.|+++....
T Consensus 14 G~i~~~~v~~Gd~V~~Gd~la~ie~~k 40 (74)
T 2d5d_A 14 GKVLRVLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred CEEEEEECCCCCEEECCCEEEEEECCC
T ss_conf 889999948999996998899998478
No 18
>>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} (A:169-231)
Probab=86.11 E-value=1.8 Score=22.63 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=28.8
Q ss_pred EEEECCCCCCCCEEEEEEC-CCCEEEEEE--CCCCCCCCCCEEEECCEEEE
Q ss_conf 9996069865511999998-998899841--15634411200220312489
Q gi|254780683|r 2 VIYVGNDLVELGNTILIRH-DDSIVTVYS--HIDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 2 Vv~~g~~~~~~G~~V~I~h-~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG 49 (84)
|...+.+-.+ +..|+|.. .++-...|. .-..+.|+.||.|++||.|-
T Consensus 11 V~~i~~~~~g-~~~i~I~~~~~g~~~~y~ip~g~~l~V~~Gd~V~~G~~LT 60 (63)
T 1hcz_A 11 ISKILRKEKG-GYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLT 60 (63)
T ss_dssp EEEEEECTTS-CEEEEEEETTTTEEEEEEECTTCCBCCCTTCEECTTCBSB
T ss_pred EEEEEECCCC-CEEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCC
T ss_conf 8886766888-5699999569996788815999858882898884698555
No 19
>>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:1069-1150)
Probab=85.05 E-value=0.51 Score=25.47 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=21.8
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.+.+..+++||.|++||.|+++-...
T Consensus 18 G~i~~~~v~~G~~V~~G~~l~~ie~~k 44 (82)
T 3hbl_A 18 GSVTEVKVSVGETVKANQPLLITEAMK 44 (82)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred EEEEEEEECCCCEECCCCEEEEEEHHC
T ss_conf 478999808999979999899996520
No 20
>>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} (A:21-166)
Probab=84.19 E-value=0.3 Score=26.66 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=21.7
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 11563441120022031248998057
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+-+.++.|++||.|++||+|.+..++
T Consensus 11 G~V~~i~v~~G~~V~kGq~L~~l~~~ 36 (146)
T 2f1m_A 11 GIILKRNFKEGSDIEAGVSLYQIDPA 36 (146)
T ss_dssp EEEEEECSCTTCEECTTSCSEEECCH
T ss_pred EEEEEEECCCCCEECCCCEEEEEECH
T ss_conf 89999988993997899999998048
No 21
>>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (D:1244-1362)
Probab=83.37 E-value=1.4 Score=23.08 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=25.6
Q ss_pred EEEEECCCCEEEEE--ECCCCCCCCCCEEEECCEEEEE
Q ss_conf 99999899889984--1156344112002203124899
Q gi|254780683|r 15 TILIRHDDSIVTVY--SHIDTPYVQKGQKVSRGHTIGL 50 (84)
Q Consensus 15 ~V~I~h~~g~~t~Y--~hl~~i~v~~G~~V~~G~~IG~ 50 (84)
.+.+...++-...| .....+.|+.||.|++||+|..
T Consensus 47 ~i~~~~~~~~~~~~~~~~~q~~~V~~G~~V~~Gq~ltd 84 (119)
T 2a6h_D 47 LSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTR 84 (119)
T ss_dssp EEEEEECSSCEEEEEECTTCCCCCCTTSEECTTCBSSS
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCEEECCCEECC
T ss_conf 69998369807999848998689848999956887215
No 22
>>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* (A:)
Probab=83.10 E-value=0.62 Score=25.01 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=20.1
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.+.+..+++||.|++||.|+++....
T Consensus 8 G~i~~~~v~~Gd~V~~G~~l~~ve~~k 34 (72)
T 1z6h_A 8 GNLWKVHVKAGDQIEKGQEVAILESMK 34 (72)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred EEEEEEECCCCCEEECCCEEEEEECCC
T ss_conf 899999927989991798999997366
No 23
>>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} (A:)
Probab=82.17 E-value=0.82 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.3
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..|++||.|++||+|+.+....
T Consensus 20 ~~i~~~~v~~Gd~V~~gd~l~~iE~~k 46 (80)
T 1bdo_A 20 SPDAKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp STTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred CCCCCCEEECCCEEECCCEEEEEEECC
T ss_conf 999980860599790388999999365
No 24
>>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* (A:)
Probab=81.87 E-value=0.74 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.8
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 11563441120022031248998057
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+-+.++.+++||.|++||+|..+..+
T Consensus 10 G~v~~i~v~~G~~V~kGq~L~~id~~ 35 (116)
T 2k32_A 10 GVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEEEEECSCTTSEECTTCEEEEEECT
T ss_pred EEEEEEECCCCCEECCCCEEEEEECH
T ss_conf 89999988898998899899987621
No 25
>>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:1087-1165)
Probab=81.63 E-value=0.58 Score=25.16 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.1
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.+.++.|++||.|++||.|+.+-...
T Consensus 18 G~i~~~~v~~Gd~V~~Gd~l~~ie~~k 44 (79)
T 2qf7_A 18 GVISRVFVSSGQAVNAGDVLVSIEAMK 44 (79)
T ss_dssp EEEEEECCSSCCCC---CEEEEEEC--
T ss_pred EEEEEEEECCCCEECCCCEEEEEEHHH
T ss_conf 589999968989979999899996520
No 26
>>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A (A:102-189)
Probab=81.37 E-value=0.9 Score=24.18 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCCCCCEEEECCEEEEEECCCC
Q ss_conf 4411200220312489980578
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg 55 (84)
..+++||.|+.|+.||++-.+.
T Consensus 21 p~vk~Gd~V~~GdilG~V~Et~ 42 (88)
T 3i4l_A 21 PKAKVGDKVVGGDIIGEVPETS 42 (88)
T ss_dssp ECCCTTCEECTTCEEEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4334588001576136575545
No 27
>>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} (A:)
Probab=81.36 E-value=3.4 Score=21.11 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=10.9
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.+..|++||.|++||.|+.+-..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~ie~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEECCCCCEECCCCEEEEEEEC
T ss_conf 99981897999489999999907
No 28
>>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} (A:)
Probab=80.65 E-value=1 Score=23.88 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=20.4
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 156344112002203124899805788
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
-+.+..|++||.|++||.|+.+.....
T Consensus 16 ~i~~~~v~~Gd~V~~G~~l~~ie~~k~ 42 (80)
T 1qjo_A 16 EVTEVMVKVGDKVAAEQSLITVEGDKA 42 (80)
T ss_dssp EEEECCCCTTCEECBTSEEEEEESSSS
T ss_pred EEEEEEECCCCEECCCCEEEEEEECCC
T ss_conf 999999179799989998999990754
No 29
>>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:644-718)
Probab=79.50 E-value=0.74 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=20.2
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.+.+..|++||.|++||.|+++....
T Consensus 15 G~i~~~~v~~Gd~V~~G~~l~~ie~~k 41 (75)
T 3bg3_A 15 GKVIDIKVVAGAKVAKGQPLCVLSAMK 41 (75)
T ss_dssp EEEEEECSCTTCCBCTTCCCEEEESSS
T ss_pred CEEEEEEECCCCEECCCCEEEEEEHHC
T ss_conf 547999969989879999899996311
No 30
>>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} (A:)
Probab=79.30 E-value=1.2 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=10.9
Q ss_pred CCCCCCCCEEEECCEEEEEECC
Q ss_conf 6344112002203124899805
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~ 53 (84)
.++.|++||.|++||.|+.+-.
T Consensus 26 ~~~~v~~Gd~V~~gd~l~~ie~ 47 (99)
T 2ejm_A 26 EKVFVKAGDKVKAGDSLMVMIA 47 (99)
T ss_dssp EEECCCTTEEECSSCEEEEEES
T ss_pred EEEECCCCCEEECCCCEEEEEC
T ss_conf 9998489999935960999973
No 31
>>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens} (A:)
Probab=78.46 E-value=0.67 Score=24.85 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.3
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.++.|++||.|++||.|+.+....
T Consensus 34 G~i~~~~V~~Gd~V~~G~~i~~ie~~k 60 (94)
T 2jku_A 34 GVVVAVSVKPGDAVAEGQEICVIEAMK 60 (94)
T ss_dssp CEEEEECCCTTCCCCTTCCCEEEEC--
T ss_pred CEEEEEEECCCCEEECCCEEEEEECCC
T ss_conf 768899937999991696699998677
No 32
>>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} (A:1-82)
Probab=78.43 E-value=3.4 Score=21.15 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=23.0
Q ss_pred EEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEEE
Q ss_conf 1999998998899841--156344112002203124899
Q gi|254780683|r 14 NTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIGL 50 (84)
Q Consensus 14 ~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG~ 50 (84)
.+++++-.......|. .=+.+.|+.||.|++||.|+.
T Consensus 42 ~v~I~d~~g~~~~~y~ip~Ga~l~V~dGd~V~~G~~lae 80 (82)
T 2auk_A 42 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 80 (82)
T ss_dssp EEEEECTTSCEEEEEECCTTCEESSCTTCEECTTCEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCEEEECCCCEEEECEEEEE
T ss_conf 899990488389997658761899827978760204898
No 33
>>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=77.96 E-value=1.2 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=15.9
Q ss_pred CCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 563441120022031248998057
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.|+.||.|++||.|+.+...
T Consensus 28 i~~~~V~~Gd~V~~Gd~l~~iE~m 51 (100)
T 2dn8_A 28 LTQYTVEDGGHVEAGSSYAEMEVM 51 (100)
T ss_dssp EEEESSCTTEEECTTCEEEEEEET
T ss_pred EEEEEECCCCEEECCCEEEEEECC
T ss_conf 999994799999059549999827
No 34
>>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} (A:)
Probab=77.62 E-value=4.4 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=20.2
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..|++||.|++||.|+.+....
T Consensus 16 g~i~~~~v~~Gd~V~~Gd~l~~ie~~k 42 (79)
T 1ghj_A 16 GTVATWHKKPGEAVKRDELIVDIETDK 42 (79)
T ss_dssp EEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred EEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 899999927979998999999999464
No 35
>>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=77.14 E-value=1.4 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=16.7
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..|++||.|++||.|+.+....
T Consensus 22 g~i~~w~v~~Gd~V~~Gd~i~~iE~~K 48 (98)
T 2dnc_A 22 GNIVKWLKKEGEAVSAGDALCEIETDK 48 (98)
T ss_dssp ECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred EEEEEEEECCCCEEEECCCEEEEECCC
T ss_conf 999999908999997075199998383
No 36
>>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* (C:)
Probab=76.98 E-value=1.4 Score=23.08 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=21.3
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 1156344112002203124899805788
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
+-+.+..|++||.|++||.|+.+....-
T Consensus 20 g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 47 (87)
T 3crk_C 20 GTVQRWEKKVGEKLSEGDLLAEIETDXA 47 (87)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSC
T ss_pred EEEEEEEECCCCEEECCCCEEEEEECCE
T ss_conf 9998999089999972632999993448
No 37
>>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} (A:266-354)
Probab=76.88 E-value=1.1 Score=23.63 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.6
Q ss_pred CCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 563441120022031248998057
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+=...++.|+.|++||+||++-+.
T Consensus 12 ~~~~~v~lG~~V~~Gq~lg~I~dp 35 (89)
T 3cdx_A 12 LFEPTHYVGEEVRTGETAGWIHFV 35 (89)
T ss_dssp EEEESCCTTCEECTTSEEEEEECT
T ss_pred EEEEECCCCCEECCCCEEEEEECC
T ss_conf 999927898994799989999667
No 38
>>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} (A:)
Probab=76.62 E-value=1.5 Score=23.01 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=13.4
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.++.|+.||.|++||.|+.+...
T Consensus 17 ~~~~v~~Gd~V~~g~~l~~iE~~ 39 (84)
T 2kcc_A 17 TQYTVEDGGHVEAGSSYAEMEVM 39 (84)
T ss_dssp EEESSCTTEEECTTCEEEEEECS
T ss_pred EEEEECCCCEECCCCEEEEEEEC
T ss_conf 99996897999899999999952
No 39
>>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} (A:)
Probab=75.80 E-value=2 Score=22.31 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=12.9
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.++.||.|..||+|+++..++
T Consensus 58 i~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 58 IKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EEEECCCSSCEECTTSEEEEEECSC
T ss_pred EEEEEECCCCEECCCCEEEEEECCC
T ss_conf 9999819999978999999997678
No 40
>>3iyd_D DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (D:938-1020)
Probab=75.31 E-value=1.2 Score=23.55 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=24.3
Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEEE
Q ss_conf 11999998998899841--156344112002203124899
Q gi|254780683|r 13 GNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIGL 50 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG~ 50 (84)
|..++++-.+...-.|. .=..+.|+.||.|++||.|+.
T Consensus 43 g~i~I~d~~g~~~~~y~vp~Ga~l~V~dGd~Vk~G~~lae 82 (83)
T 3iyd_D 43 TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 82 (83)
T ss_dssp CCCEEBCTTSCBCCCCCCCSSCCBSSCTTCEECSSEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHCCEEEEEECCCEEECCEEEEE
T ss_conf 1467514542256665331101478736954762537994
No 41
>>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} (A:)
Probab=75.28 E-value=1.1 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=16.0
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.+..|+.||.|++||.|+.+....
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ve~~k 42 (81)
T 1gjx_A 18 IIAVEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp EEEECCCSSCBCCSSCCCEEEECSS
T ss_pred EEEEEECCCCEECCCCEEEEEEECC
T ss_conf 9999918979997999899999278
No 42
>>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (C:173-232)
Probab=75.21 E-value=0.29 Score=26.74 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.3
Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEE
Q ss_conf 11999998998899841--1563441120022031248
Q gi|254780683|r 13 GNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTI 48 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~I 48 (84)
+..|+|...+|-...|. .=..+.|+.||.|++||.|
T Consensus 22 ~~~I~I~~~~ge~~~y~IP~g~~l~V~eGd~V~~G~~L 59 (60)
T 1vf5_C 22 KYQVSIQTDSGKTVVDTIPAGPELIVSEGQAVKAGEAL 59 (60)
T ss_dssp CCCCBCCCCSSSCCCCCCCSSSCCCCCTTCCCTTSCCC
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCEEECCCCC
T ss_conf 36999977999887774289975887079878569866
No 43
>>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} (A:)
Probab=75.15 E-value=1.8 Score=22.59 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=20.6
Q ss_pred EECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 4115634411200220312489980578
Q gi|254780683|r 28 YSHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 28 Y~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
=+.+.+..|++||.|++||.|+.+-...
T Consensus 21 ~g~i~~w~v~~Gd~V~~Gd~l~~vEt~K 48 (108)
T 2dne_A 21 AGTIARWEKKEGDKINEGDLIAEVETDK 48 (108)
T ss_dssp EEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred EEEEEEEECCCCCEEECCCCEEEEEECC
T ss_conf 6999899818999996065389998086
No 44
>>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C (A:107-183)
Probab=75.11 E-value=1.5 Score=22.97 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.4
Q ss_pred CCCCCCEEEECCEEEEEECCCC
Q ss_conf 4411200220312489980578
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg 55 (84)
..+++||.|+.|+.+|++-.+.
T Consensus 15 P~vk~Gd~V~~Gdi~G~V~E~~ 36 (77)
T 3gqb_A 15 PMVKPGDEVRGGMVLGTVPEFG 36 (77)
T ss_dssp ECCCTTCEECTTCEEEEEEETT
T ss_pred CCCCCCCCCCCCCEEEEECCCC
T ss_conf 1245687135786033532565
No 45
>>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} (A:83-190)
Probab=75.06 E-value=1.5 Score=22.95 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=27.2
Q ss_pred EEEEEECCCCEEE---------EE-ECC-CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 1999998998899---------84-115-63441120022031248998057
Q gi|254780683|r 14 NTILIRHDDSIVT---------VY-SHI-DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 14 ~~V~I~h~~g~~t---------~Y-~hl-~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
-.|.|...+|-.- .| .-. .-+.|+.||.|++|++|+++...
T Consensus 55 P~I~I~d~~G~~~~~~~~~~~a~Y~LP~ga~l~V~dG~~V~~GdvlAkiPre 106 (108)
T 2auk_A 55 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 106 (108)
T ss_dssp CEEEEECTTSCBCBCTTSSCBCEEECCTTCEESSCTTCEECTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEECCCCCCEEEECCCCEEEEECCCCEECCCCEEEECCCC
T ss_conf 4699985789727715999618997799969998398998388899988523
No 46
>>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein structure initiative, midwest center for structural genomics, GTP-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} (A:207-277)
Probab=74.85 E-value=1.6 Score=22.92 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=32.6
Q ss_pred EEEEECCCCEEEEEE--CCC---CCCCCCCEEEECCEEEEEECCCC
Q ss_conf 999998998899841--156---34411200220312489980578
Q gi|254780683|r 15 TILIRHDDSIVTVYS--HID---TPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 15 ~V~I~h~~g~~t~Y~--hl~---~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
-++|....|..+.|+ +|+ .++|.+|+.|-.|++||.-..+.
T Consensus 7 G~LVs~~~G~at~yaL~~lq~RG~lFV~pg~~VYeGmIVGe~~r~~ 52 (71)
T 3e3x_A 7 GVLIANAAGKALTNALFNLQERGRLFIGHGVEVYEGXVIGIHSRDN 52 (71)
T ss_dssp CEEEESSCEECCHHHHHHHTTSEEESCCTTCEECTTEEEEEESSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCEEEECCCCHHHCCEEEEECCCCC
T ss_conf 3699815530267889988753118865660322476885227888
No 47
>>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} (B:)
Probab=73.76 E-value=2 Score=22.37 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=18.8
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..|++||.|++||.|..+-...
T Consensus 42 g~i~~~~v~~Gd~V~~Gd~l~~iEt~K 68 (128)
T 1y8o_B 42 GTVQRWEKKVGEKLSEGDLLAEIETDK 68 (128)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred EEEEEEEECCCCEEEECCCEEEEECCC
T ss_conf 999999918999996063099997385
No 48
>>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} (A:)
Probab=71.52 E-value=3.2 Score=21.27 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=19.6
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 1156344112002203124899805788
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
+.+.++.++.||.|..|++|+.+..+..
T Consensus 48 G~i~~i~~~~G~~V~~G~~L~~i~~~~~ 75 (85)
T 2k7v_A 48 GVVKELKVNVGDKVKTGSLIMIFEVEGA 75 (85)
T ss_dssp BCCCEECSCTTCCBCTTSEEEEEECCSS
T ss_pred EEEEEEECCCCCEECCCCEEEEEECCCC
T ss_conf 5999998189899899999999974887
No 49
>>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B (A:119-241)
Probab=70.99 E-value=1.7 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=19.3
Q ss_pred CCCCCCCC-CCEEEECCEEEEEECCC
Q ss_conf 15634411-20022031248998057
Q gi|254780683|r 30 HIDTPYVQ-KGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 30 hl~~i~v~-~G~~V~~G~~IG~vg~t 54 (84)
-+.++.|+ .||.|++||+|..+..+
T Consensus 13 ~i~~~~v~~~G~~V~kGq~l~~ld~~ 38 (123)
T 3h9i_A 13 FIDKVYPLTVGDKVQKGTPLLDLTIP 38 (123)
T ss_dssp CCBCCCSCCSSCEESTTCCCEEEECH
T ss_pred CCCCCCCCCCCCEEECCCEEEEECCH
T ss_conf 13442216788888379625687572
No 50
>>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099} (A:146-332)
Probab=69.94 E-value=1.9 Score=22.45 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=19.7
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECC
Q ss_conf 1156344112002203124899805
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~ 53 (84)
+.+=...++.||.|++||+||++=+
T Consensus 120 ~G~~~~~~~~G~~V~~G~~ig~I~~ 144 (187)
T 2qj8_A 120 PGIFEPRCSVXDEVEQGDVVGVLHP 144 (187)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEEC
T ss_pred CCEEEECCCCCCEECCCCEEEEECC
T ss_conf 8668873789899889999999817
No 51
>>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} (A:369-459)
Probab=65.61 E-value=3.3 Score=21.22 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.5
Q ss_pred CCCCCCEEEECCEEEEEECCCC
Q ss_conf 4411200220312489980578
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.||.|++||+|.++=.+.
T Consensus 47 l~~k~Gd~V~~Gepl~~i~~~~ 68 (91)
T 1uou_A 47 LLVDVGQRLRRGTPWLRVHRDG 68 (91)
T ss_dssp ECSCTTCEECTTCEEEEEEESS
T ss_pred EECCCCCEECCCCEEEEEECCC
T ss_conf 6146879856999389996698
No 52
>>3iyd_C DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (C:701-796)
Probab=65.23 E-value=2.6 Score=21.78 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.0
Q ss_pred CCCCCCCEEEECCEEEEEECCC
Q ss_conf 3441120022031248998057
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+..|++||+|++||+|+--..+
T Consensus 68 rPiV~~G~~VkkG~ilADG~at 89 (96)
T 3iyd_C 68 MPCVSLGEPVERGDVLADGPST 89 (96)
T ss_dssp EECCCSSSCBCTTCBSEECTTC
T ss_pred CCCCCCCCEEECCCEECCCCCC
T ss_conf 6642268637507472367888
No 53
>>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8} (A:318-414)
Probab=64.01 E-value=3.6 Score=21.02 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.3
Q ss_pred CCCCCCEEEECCEEEEEECCCC
Q ss_conf 4411200220312489980578
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.||.|++||+|.++=.+.
T Consensus 55 l~~k~Gd~V~~Gepl~~i~~~~ 76 (97)
T 2dsj_A 55 LLKKPGDRVERGEALALVYHRR 76 (97)
T ss_dssp ESCCTTCEECTTSEEEEEEECS
T ss_pred EEECCCCEECCCCEEEEEECCC
T ss_conf 8615869867999189996696
No 54
>>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} (A:330-429)
Probab=63.75 E-value=2.9 Score=21.46 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=18.3
Q ss_pred CCCCCCCEEEECCEEEEEECCC
Q ss_conf 3441120022031248998057
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.+..+.||.|++||+|.++=.+
T Consensus 55 ~l~~kvGd~V~~Ge~l~~i~~~ 76 (100)
T 2tpt_A 55 TDMARLGDQVDGQRPLAVIHAK 76 (100)
T ss_dssp ESCCCTTCEEBTTBCSEEEEES
T ss_pred EEECCCCCEECCCCEEEEEECC
T ss_conf 8732696986799918999759
No 55
>>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} (A:)
Probab=63.41 E-value=3.6 Score=21.00 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=19.6
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..+++||.|++||.|+.+....
T Consensus 17 ~~i~~~~v~~Gd~V~~g~~l~~ie~~k 43 (80)
T 1pmr_A 17 ATVATWHKKPGDAVVRDEVLVEIETDK 43 (80)
T ss_dssp EECCBCCCCTTCCBSSSCCBCBCCSSS
T ss_pred EEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 999999927989997999899999377
No 56
>>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement; HET: MES; 2.10A {Bacillus stearothermophilus} (A:327-423)
Probab=61.85 E-value=4.2 Score=20.63 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=18.9
Q ss_pred CCCCCCEEEECCEEEEEECCCCC
Q ss_conf 44112002203124899805788
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
+..+.||.|++||+|.++=.+..
T Consensus 54 l~~kvGd~V~~G~~l~~iy~~~~ 76 (97)
T 1brw_A 54 LHKKIGDRVQKGEALATIHSNRP 76 (97)
T ss_dssp ESCCTTCEECTTCEEEEEEESSS
T ss_pred EECCCCCEECCCCEEEEEECCCC
T ss_conf 85169599679990899975884
No 57
>>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:1012-1066)
Probab=58.39 E-value=2.5 Score=21.81 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=24.9
Q ss_pred EEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEE
Q ss_conf 1999998998899841--1563441120022031248
Q gi|254780683|r 14 NTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTI 48 (84)
Q Consensus 14 ~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~I 48 (84)
..++|...+|-.-.|. .-..+.|+.||.|++||.|
T Consensus 19 ~~iii~~~~ge~~~Y~vp~g~~i~V~eGd~V~~G~~L 55 (55)
T 1hqm_D 19 RLSVFVESEGFSKEYKLPKDARLLVKDGDYVEAGQPL 55 (55)
T ss_dssp CCCCCCBCSSCCCCCCCSSCCCCCCCSCCSSTTCSCC
T ss_pred EEEEEECCCCEEEEEEECCCCEEEECCCCEEECCCEE
T ss_conf 5999978998289999679998986599998079998
No 58
>>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* (A:135-164,A:399-511)
Probab=56.25 E-value=11 Score=18.44 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=27.0
Q ss_pred CEEEECCE---EEEEECCCCCCCCCEEEEEEEECCEECCHHHH
Q ss_conf 00220312---48998057888885699999786898052698
Q gi|254780683|r 39 GQKVSRGH---TIGLSGKSGNAQHPQVHFELRKNAIAMDPIKF 78 (84)
Q Consensus 39 G~~V~~G~---~IG~vg~tg~~~g~hLhfei~~~g~~vdP~~~ 78 (84)
.++|+.-+ ++=++|+||+..|..+-++|+.+|..|+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qVKi~G~rI~~~EI 45 (143)
T 3e7w_A 3 DQWVKEHETFYIIYTSGSTGNPKGVQISFQIKLHGYRMELEEI 45 (143)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEESEEEETTEEEEHHHH
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCEEECHHHH
T ss_conf 5679856627886114443233211112358889899999999
No 59
>>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} (K:)
Probab=51.88 E-value=3.5 Score=21.04 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=12.9
Q ss_pred CCCCCCCCCCEEEECCEEEEEECC
Q ss_conf 156344112002203124899805
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~ 53 (84)
-|.++.+++|+.|..|+.|+.+..
T Consensus 56 ~i~~i~~~~G~~v~vG~~l~~I~~ 79 (229)
T 1zy8_K 56 ILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ------------------------
T ss_pred CEEEEEEECCCCCCCCCCEEEEEE
T ss_conf 378999722852124663124652
No 60
>>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A (I:)
Probab=49.94 E-value=3.9 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=11.1
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.+..|++||.|++||.|..+-.+
T Consensus 20 ~~w~vk~GD~V~~gd~l~~vEtd 42 (428)
T 3dva_I 20 VKWFVKPGDEVNEDDVLCEVQND 42 (428)
T ss_dssp -----------------------
T ss_pred EEEEECCCCEECCCCCEEEEECC
T ss_conf 99991899997899909999858
No 61
>>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} (A:93-159,A:246-425)
Probab=48.51 E-value=9.3 Score=18.83 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.3
Q ss_pred CCCCCCEEEECCEEEEEECCCC
Q ss_conf 4411200220312489980578
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+..|.||.|++||+|.++=.+.
T Consensus 205 l~kk~Gd~V~~Gd~l~~iy~~~ 226 (247)
T 3h5q_A 205 LNKKIGDKVEEGESLLTIHSNR 226 (247)
T ss_dssp ESCCTTCEECTTSEEEEEEESS
T ss_pred EECCCCCEECCCCEEEEEECCC
T ss_conf 7157959867999189997585
No 62
>>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (D:396-450)
Probab=41.30 E-value=4 Score=20.74 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=25.2
Q ss_pred EEEECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 984115634411200220312489980578
Q gi|254780683|r 26 TVYSHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 26 t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
-+|..-++..|..||+|..|+.++-.|+-.
T Consensus 4 kvy~~~d~~~v~~gdrv~pgd~lad~g~vr 33 (55)
T 2a6h_D 4 RVYPFEDDVEVSTGDRVAPGDVLADGGKVK 33 (55)
T ss_dssp ESSCCCCCSSSCCSCCSSSCCCSCCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCHHHH
T ss_conf 344421110013465235102210001455
No 63
>>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (D:165-395)
Probab=37.94 E-value=7.7 Score=19.26 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=22.1
Q ss_pred EEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEE
Q ss_conf 999998998899841--15634411200220312489
Q gi|254780683|r 15 TILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIG 49 (84)
Q Consensus 15 ~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG 49 (84)
.++|...++...-|- .-+.+.|+.||.|++||.|.
T Consensus 168 ~~ii~~~~g~~~ey~Ip~g~~l~V~~Gd~V~~G~~lt 204 (231)
T 2a6h_D 168 YLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIV 204 (231)
T ss_dssp --------------------------------CCBCC
T ss_pred HHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 0122222034400001223444454210000121001
No 64
>>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl, structural genomics; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A (A:)
Probab=31.37 E-value=27 Score=16.34 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.3
Q ss_pred CCCCCCEEEECCEEEEEECCCCC
Q ss_conf 44112002203124899805788
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
..++.|+.|++||.|+.+-.+..
T Consensus 65 ~l~~~G~~v~~g~~l~~ies~K~ 87 (155)
T 3hgb_A 65 QLPVIGTAVTAGETFGEVESTKS 87 (155)
T ss_dssp ECCCTTCEECTTCEEEEEEESSC
T ss_pred ECCCCCCEECCCCEEEEEEECCC
T ss_conf 33778857507986888886154
No 65
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:96-127,A:223-358)
Probab=30.96 E-value=32 Score=16.00 Aligned_cols=18 Identities=0% Similarity=0.045 Sum_probs=14.6
Q ss_pred CCCCCEEEEEEEECCEEC
Q ss_conf 888856999997868980
Q gi|254780683|r 56 NAQHPQVHFELRKNAIAM 73 (84)
Q Consensus 56 ~~~g~hLhfei~~~g~~v 73 (84)
..++.|+||+++++++.+
T Consensus 36 ~GSG~H~H~SL~~~g~N~ 53 (168)
T 2j9i_A 36 AGAGSHSIWDVGAAGTNA 53 (168)
T ss_dssp CCCBCCEEECEEETTEES
T ss_pred CCCCEEEEEECCCCCCCC
T ss_conf 334427999534899876
No 66
>>1zko_A Glycine cleavage system H protein; TM0212, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A (A:)
Probab=29.60 E-value=32 Score=15.94 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=19.1
Q ss_pred CCCCCCEEEECCEEEEEECCCCC
Q ss_conf 44112002203124899805788
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
..++.|+.|++||.|+.+-..+.
T Consensus 51 ~~~~~G~~v~~gd~l~~IEs~K~ 73 (136)
T 1zko_A 51 DLPEVGREVKKGEVVASIESVKA 73 (136)
T ss_dssp ECCCTTCEECTTCEEEEEEESSC
T ss_pred ECCCCCCCCCCCCCEEEEEEECC
T ss_conf 87999861037970899986034
No 67
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:655-778,A:874-986)
Probab=25.44 E-value=35 Score=15.80 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=25.8
Q ss_pred EEEEEECCCCEEEEEECCCC-CCCCCCEEEECCEEEEEECCCCC
Q ss_conf 19999989988998411563-44112002203124899805788
Q gi|254780683|r 14 NTILIRHDDSIVTVYSHIDT-PYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 14 ~~V~I~h~~g~~t~Y~hl~~-i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
..|.++| ..-.|.+-++ +.-..-=.+++||.||.+|.||.
T Consensus 16 g~Ief~~---VsF~Yp~~~~~vL~disl~i~~Ge~vAIVG~sGs 56 (237)
T 2iw3_A 16 AIVKVTN---XEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGA 56 (237)
T ss_dssp EEEEEEE---EEECCTTCSSCSEEEEEEEEETTCEEEECSCCCH
T ss_pred CCCEEEE---EEEEECCCCCCEECCEEEEECCCCEEEEECCCCC
T ss_conf 0010247---9998368777501140258627976999677677
No 68
>>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} (A:1-121,A:287-298)
Probab=24.86 E-value=39 Score=15.51 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=16.9
Q ss_pred CCCCCCEEEECCEEEEEECC
Q ss_conf 44112002203124899805
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~ 53 (84)
..++.|+.|++|+.|.++-.
T Consensus 90 ~~~~DG~~v~~G~~i~~i~G 109 (133)
T 3gnn_A 90 WRHREGDRMSADSTVCELRG 109 (133)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEECCCCEEEECCEEEEEEH
T ss_conf 10136648874010799950
No 69
>>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} (A:289-364)
Probab=24.11 E-value=29 Score=16.17 Aligned_cols=25 Identities=4% Similarity=-0.181 Sum_probs=19.3
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECC
Q ss_conf 1156344112002203124899805
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~ 53 (84)
+.|-+-.-+.|+.+++|++++.+=+
T Consensus 10 gGmVEY~a~~G~plkaG~pLaniLr 34 (76)
T 3fmc_A 10 AGXVEYLGKVGVPXKATDPLVNLLR 34 (76)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEEC
T ss_pred CCEEEECCCCCCEECCCCEEEEEEC
T ss_conf 9589888899798779999999966
No 70
>>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.00A {Chromobacterium violaceum atcc 12472} (A:)
Probab=23.23 E-value=21 Score=16.89 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=18.4
Q ss_pred CCCCCCCEEEECCEEEEEECCC
Q ss_conf 3441120022031248998057
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.-.++.|+.|++||+||...+.
T Consensus 276 ~~~~~~g~~v~~G~~i~~~~~~ 297 (341)
T 1yw4_A 276 ADSVENFTLLPDGXLIAEDGAV 297 (341)
T ss_dssp CTTCCBTEECCSSCCCC-----
T ss_pred CCCCCCCEECCCCCEEEEECCE
T ss_conf 6877896386899788995897
No 71
>>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* (A:1-116,A:262-273)
Probab=22.39 E-value=44 Score=15.23 Aligned_cols=20 Identities=0% Similarity=-0.011 Sum_probs=17.2
Q ss_pred CCCCCCCEEEECCEEEEEEC
Q ss_conf 34411200220312489980
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSG 52 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg 52 (84)
+..++.|+.|.+|++|.++-
T Consensus 61 ~~~~~eG~~v~~ge~i~~i~ 80 (128)
T 2b7n_A 61 VQTIKDKERFKPKDALMEIR 80 (128)
T ss_dssp EEECCTTCEECTTCEEEEEE
T ss_pred EEECCCCCEEEECCEEEEEE
T ss_conf 57314786575210048982
No 72
>>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:)
Probab=21.82 E-value=39 Score=15.52 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.7
Q ss_pred EEEEECCEECCHHHH
Q ss_conf 999786898052698
Q gi|254780683|r 64 FELRKNAIAMDPIKF 78 (84)
Q Consensus 64 fei~~~g~~vdP~~~ 78 (84)
.+|.++|+++||..+
T Consensus 59 i~I~qkG~pVdp~~~ 73 (85)
T 2ns0_A 59 VEVTQKGAVVDPRSA 73 (85)
T ss_dssp EEEEETTEECCTTTC
T ss_pred EEEEECCEECCCCCC
T ss_conf 899779987471127
No 73
>>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.10A {Escherichia coli} (A:)
Probab=20.35 E-value=53 Score=14.83 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=20.2
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-...++.|+.|++||+||.+.+.-
T Consensus 272 ~~~~~~~~~~~V~~G~~i~~~~~~~ 296 (335)
T 1yw6_A 272 HXASDTLNFXPFEKGTLLAQDGEER 296 (335)
T ss_dssp CSCTTCCBTCEEETTCBCEECSSCC
T ss_pred EECCCCCCCEECCCCCEEEEECCEE
T ss_conf 8468767864817987899979986
Done!