Query gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 84
No_of_seqs 112 out of 5508
Neff 6.5
Searched_HMMs 23785
Date Tue May 31 17:40:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780683.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gu1_A Zinc peptidase; alpha/b 100.0 1.1E-31 4.6E-36 186.7 7.1 77 1-78 252-328 (361)
2 2hsi_A Putative peptidase M23; 100.0 5.5E-29 2.3E-33 172.4 8.4 83 1-84 200-282 (282)
3 1qwy_A Peptidoglycan hydrolase 99.9 2.3E-26 9.8E-31 158.6 7.6 82 1-82 205-291 (291)
4 3nyy_A Putative glycyl-glycine 99.9 4.2E-23 1.8E-27 141.4 8.4 81 1-82 149-241 (252)
5 3it5_A Protease LASA; metallop 99.9 1.3E-21 5.6E-26 133.4 8.9 66 12-77 63-136 (182)
6 3csq_A Morphogenesis protein 1 99.7 1.8E-17 7.6E-22 111.6 5.4 71 1-71 212-288 (334)
7 1ax3_A Iiaglc, glucose permeas 88.4 0.62 2.6E-05 24.2 4.8 42 11-53 65-117 (162)
8 2gpr_A Glucose-permease IIA co 87.9 0.58 2.4E-05 24.4 4.4 42 11-53 60-112 (154)
9 1k8m_A E2 component of branche 85.3 0.43 1.8E-05 25.1 2.6 47 15-61 38-88 (93)
10 2jxm_B Cytochrome F; copper, e 84.1 1.3 5.4E-05 22.5 4.6 40 11-50 188-229 (249)
11 2f1m_A Acriflavine resistance 83.9 0.22 9.4E-06 26.6 0.6 26 29-54 31-56 (277)
12 2k32_A A; NMR {Campylobacter j 83.4 0.38 1.6E-05 25.3 1.7 25 30-54 11-35 (116)
13 1ci3_M Protein (cytochrome F); 82.9 1.8 7.4E-05 21.8 4.9 38 13-50 190-229 (249)
14 1f3z_A EIIA-GLC, glucose-speci 82.8 1.2 5E-05 22.7 4.0 41 12-53 66-117 (161)
15 1vf7_A Multidrug resistance pr 82.3 0.49 2.1E-05 24.7 1.9 25 29-53 52-76 (369)
16 2d5d_A Methylmalonyl-COA decar 81.2 0.57 2.4E-05 24.4 1.9 25 31-55 16-40 (74)
17 1q90_A Apocytochrome F; membra 80.8 1.3 5.5E-05 22.5 3.6 38 13-50 191-230 (292)
18 1z6h_A Biotin/lipoyl attachmen 80.8 0.57 2.4E-05 24.4 1.7 24 31-54 10-33 (72)
19 1qjo_A Dihydrolipoamide acetyl 80.5 0.6 2.5E-05 24.3 1.8 24 31-54 17-40 (80)
20 1dcz_A Transcarboxylase 1.3S s 79.7 0.59 2.5E-05 24.3 1.5 25 31-55 19-43 (77)
21 1bdo_A Acetyl-COA carboxylase; 79.2 0.81 3.4E-05 23.6 2.1 24 32-55 23-46 (80)
22 3fpp_A Macrolide-specific effl 78.6 0.66 2.8E-05 24.1 1.5 25 30-54 41-65 (341)
23 3lnn_A Membrane fusion protein 78.3 0.88 3.7E-05 23.4 2.1 25 30-54 67-91 (359)
24 2kcc_A Acetyl-COA carboxylase 77.9 0.78 3.3E-05 23.7 1.7 24 31-54 16-39 (84)
25 1ghj_A E2, E2, the dihydrolipo 77.4 0.97 4.1E-05 23.2 2.0 26 30-55 17-42 (79)
26 1gjx_A Pyruvate dehydrogenase; 77.3 0.79 3.3E-05 23.7 1.6 23 32-54 19-41 (81)
27 1iyu_A E2P, dihydrolipoamide a 77.1 3.8 0.00016 20.1 5.1 23 32-54 16-38 (79)
28 2dn8_A Acetyl-COA carboxylase 76.2 2 8.3E-05 21.6 3.4 25 31-55 28-52 (100)
29 2jku_A Propionyl-COA carboxyla 75.5 0.61 2.6E-05 24.3 0.6 25 31-55 36-60 (94)
30 2ejm_A Methylcrotonoyl-COA car 74.6 1.4 5.7E-05 22.4 2.2 22 33-54 27-48 (99)
31 2k7v_A Dihydrolipoyllysine-res 74.0 1.8 7.6E-05 21.8 2.7 40 17-56 32-75 (85)
32 1pmr_A Dihydrolipoyl succinylt 69.4 1.5 6.2E-05 22.2 1.4 25 30-54 18-42 (80)
33 3crk_C Dihydrolipoyllysine-res 66.3 2.5 0.00011 21.0 2.1 26 30-55 21-46 (87)
34 3cdx_A Succinylglutamatedesucc 66.3 2.2 9.3E-05 21.3 1.8 23 31-53 277-299 (354)
35 2dne_A Dihydrolipoyllysine-res 66.1 2.5 0.0001 21.0 2.0 27 29-55 22-48 (108)
36 2auk_A DNA-directed RNA polyme 65.8 7.1 0.0003 18.6 4.7 21 32-52 62-82 (190)
37 1y8o_B Dihydrolipoyllysine-res 65.0 2.6 0.00011 20.9 1.9 27 29-55 42-68 (128)
38 3hbl_A Pyruvate carboxylase; T 64.3 2.5 0.0001 21.0 1.7 30 26-55 1079-1112(1150)
39 2dnc_A Pyruvate dehydrogenase 62.5 3.2 0.00014 20.4 2.0 21 33-53 26-46 (98)
40 2qf7_A Pyruvate carboxylase pr 62.3 2.3 9.6E-05 21.2 1.3 23 32-54 1107-1129(1165)
41 3bg3_A Pyruvate carboxylase, m 61.3 2 8.5E-05 21.5 0.8 21 33-53 662-682 (718)
42 3n6r_A Propionyl-COA carboxyla 61.2 3 0.00013 20.6 1.7 23 32-54 624-646 (681)
43 2qj8_A MLR6093 protein; NP_106 54.9 3.8 0.00016 20.1 1.3 22 33-54 269-290 (332)
44 3h9i_A Cation efflux system pr 53.3 4.5 0.00019 19.7 1.5 23 31-53 132-155 (407)
45 1zy8_K Pyruvate dehydrogenase 51.1 2.6 0.00011 20.9 0.0 27 29-55 18-44 (229)
46 3fmc_A Putative succinylglutam 45.1 7.5 0.00032 18.5 1.6 22 33-54 302-323 (368)
47 1e2w_A Cytochrome F; electron 37.4 22 0.00093 16.0 3.7 40 13-53 191-233 (251)
48 1brw_A PYNP, protein (pyrimidi 36.5 13 0.00056 17.2 1.8 23 33-55 379-401 (433)
49 3h5q_A PYNP, pyrimidine-nucleo 34.8 14 0.0006 17.0 1.7 21 34-54 383-403 (436)
50 1uou_A Thymidine phosphorylase 34.8 15 0.00062 17.0 1.8 22 34-55 415-436 (474)
51 2dsj_A Pyrimidine-nucleoside ( 34.0 15 0.00063 16.9 1.7 23 33-55 371-393 (423)
52 2tpt_A Thymidine phosphorylase 29.1 16 0.00069 16.7 1.2 21 34-54 385-405 (440)
53 3dva_I Dihydrolipoyllysine-res 24.1 13 0.00056 17.2 0.0 25 31-55 56-80 (428)
No 1
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.97 E-value=1.1e-31 Score=186.70 Aligned_cols=77 Identities=36% Similarity=0.558 Sum_probs=75.0
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECCEECCHHHH
Q ss_conf 599960698655119999989988998411563441120022031248998057888885699999786898052698
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAIAMDPIKF 78 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g~~vdP~~~ 78 (84)
+|+|+||+ .+|||+|+|+|++||.|+|+||+++.|++||+|++||+||+||+||.++|||||||||++|+++||+..
T Consensus 252 ~V~~ag~~-~gyGn~V~I~H~~g~~T~YaHls~~~V~~G~~V~~Gq~Ig~vG~TG~stgphLHFEvr~~g~~vdPl~~ 328 (361)
T 2gu1_A 252 KVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTGPHLHFEVLVRNRPVDAMKA 328 (361)
T ss_dssp EEEEEEEE-TTTEEEEEEECSSSEEEEEEEESEECCCTTCEECTTCEEEECCCCSSCSSCCEEEEEEETTEEECTTCS
T ss_pred EEEEEEEC-CCCCCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCEECCCCCC
T ss_conf 89999864-788875899879985999844511133889999979999987688998986789999989989699635
No 2
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=99.95 E-value=5.5e-29 Score=172.43 Aligned_cols=83 Identities=29% Similarity=0.590 Sum_probs=79.2
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECCEECCHHHHHH
Q ss_conf 59996069865511999998998899841156344112002203124899805788888569999978689805269875
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAIAMDPIKFLE 80 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g~~vdP~~~l~ 80 (84)
+|+++++ ...+|++|+|+|++|+.|+|+||+++.|++||.|++||+||++|+||+++|||||||||++|+++||+.||.
T Consensus 200 ~V~~~~~-~~~~G~~v~i~hg~g~~t~Y~hls~i~V~~G~~V~~G~~IG~vG~tg~~tGphLhfei~~~g~~vdP~~~l~ 278 (282)
T 2hsi_A 200 KVILIGD-YFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATGPHMHWNVSLNDARVDPAIFIG 278 (282)
T ss_dssp EEEEEEE-ETTTEEEEEEEEETTEEEEEEEESEECSCTTCEECTTCEEEECCCTTTCSSCCEEEEEEETTEEECHHHHHT
T ss_pred EEEECCC-CCCCCCEEEEECCCCEEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCEEECHHHHHC
T ss_conf 7474135-687980999986997799963636035387999998997997458999998679999999999989599757
Q ss_pred CCCC
Q ss_conf 0385
Q gi|254780683|r 81 EKIP 84 (84)
Q Consensus 81 ~k~p 84 (84)
+-.|
T Consensus 279 ~~~p 282 (282)
T 2hsi_A 279 AFQP 282 (282)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 1598
No 3
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=99.93 E-value=2.3e-26 Score=158.55 Aligned_cols=82 Identities=32% Similarity=0.509 Sum_probs=75.8
Q ss_pred CEEEECCCCCCCCEEEEEECCCC-EEEEEECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECC----EECCH
Q ss_conf 59996069865511999998998-89984115634411200220312489980578888856999997868----98052
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDS-IVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNA----IAMDP 75 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g-~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g----~~vdP 75 (84)
+|+++++...++|++|+|+|+++ +.++|+||+++.|++||.|++||+||++|++|.+++||||||||+++ .+|||
T Consensus 205 ~Vv~~g~~~~g~G~~ViI~h~~g~~~t~Y~HL~~i~Vk~Gq~V~~Gq~IG~vG~TG~stgpHLHFEI~~~g~~~~~~VDP 284 (291)
T 1qwy_A 205 TVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDP 284 (291)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSSEEEEEEEESEECCCTTCEECTTCEEEECCCCSSCSSSEEEEEEEESEESGGGEECC
T ss_pred EEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEECCC
T ss_conf 99998874678986999984899889997878825668889999789999868889989866899999899179877286
Q ss_pred HHHHHCC
Q ss_conf 6987503
Q gi|254780683|r 76 IKFLEEK 82 (84)
Q Consensus 76 ~~~l~~k 82 (84)
++||++|
T Consensus 285 ~~~L~~R 291 (291)
T 1qwy_A 285 TSYLQSR 291 (291)
T ss_dssp HHHHC--
T ss_pred HHHHHCC
T ss_conf 9970159
No 4
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=99.88 E-value=4.2e-23 Score=141.37 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=71.5
Q ss_pred CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCC-CCCCCEEEECCEEEEEECCCCCC----C---CCEEEEEEEECC--
Q ss_conf 5999606986551199999899889984115634-41120022031248998057888----8---856999997868--
Q gi|254780683|r 1 MVIYVGNDLVELGNTILIRHDDSIVTVYSHIDTP-YVQKGQKVSRGHTIGLSGKSGNA----Q---HPQVHFELRKNA-- 70 (84)
Q Consensus 1 VVv~~g~~~~~~G~~V~I~h~~g~~t~Y~hl~~i-~v~~G~~V~~G~~IG~vg~tg~~----~---g~hLhfei~~~g-- 70 (84)
+|+++++. .++|++|+|+|++|+.++|+||+++ .|++||.|++||+||++|+||.+ + +|||||||+.++
T Consensus 149 ~V~~~g~~-~~~G~~V~I~h~~g~~t~Y~HL~~~~~V~~G~~V~~Gq~IG~vG~TG~~~~~stg~~~pHLHfev~~~~~~ 227 (252)
T 3nyy_A 149 VVTEKGWL-EKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGT 227 (252)
T ss_dssp EEEEEEEE-TTTEEEEEEECTTSCEEEEEEESEECSCCTTCEECTTCEEEECBCCCSSSTTCCCSSCCEEEEEEEEEETT
T ss_pred EEEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 99985574-99980999996898889851356555568899998689999825777889887898898789999989987
Q ss_pred --EECCHHHHHHCC
Q ss_conf --980526987503
Q gi|254780683|r 71 --IAMDPIKFLEEK 82 (84)
Q Consensus 71 --~~vdP~~~l~~k 82 (84)
.++||++||+..
T Consensus 228 ~~~~vdP~~~Lk~~ 241 (252)
T 3nyy_A 228 EEISVNPYPVLRYA 241 (252)
T ss_dssp EEEEECCHHHHHHT
T ss_pred CCEEECCHHHHHHH
T ss_conf 75470879999999
No 5
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A*
Probab=99.85 E-value=1.3e-21 Score=133.44 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=62.2
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEEC--------CCCCCCCCEEEEEEEECCEECCHHH
Q ss_conf 51199999899889984115634411200220312489980--------5788888569999978689805269
Q gi|254780683|r 12 LGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSG--------KSGNAQHPQVHFELRKNAIAMDPIK 77 (84)
Q Consensus 12 ~G~~V~I~h~~g~~t~Y~hl~~i~v~~G~~V~~G~~IG~vg--------~tg~~~g~hLhfei~~~g~~vdP~~ 77 (84)
.|+.|+|+|++|+.++|+||+++.|++||.|++||.||.+| ++|.+++||||||||++++++||..
T Consensus 63 ~G~~V~I~H~~G~~t~Y~Hl~~~~V~~G~~V~~Gq~IG~~g~~~~~~~g~tG~stgpHLHfei~~~g~~v~~~~ 136 (182)
T 3it5_A 63 SRCQVRVTHPSGWATNYYHMDQIQVSNGQQVSADTKLGVYAGNINTALCEGGSSTGPHLHFSLLYNGAFVSLQG 136 (182)
T ss_dssp ETTEEEEECTTSEEEEEESEESCCCCTTCEECTTCEEEEECSSHHHHTTTSCCCSSSCEEEEEEETTEECCCTT
T ss_pred CCCEEEEEECCCCEEEEECCEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCC
T ss_conf 98499999389838986424012676898994772882753766652147776588888999998998969798
No 6
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=99.69 E-value=1.8e-17 Score=111.59 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=57.0
Q ss_pred CEEEECCCC--CCCCEEEEEECCCCE--EEEE--ECCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEEECCE
Q ss_conf 599960698--655119999989988--9984--1156344112002203124899805788888569999978689
Q gi|254780683|r 1 MVIYVGNDL--VELGNTILIRHDDSI--VTVY--SHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAI 71 (84)
Q Consensus 1 VVv~~g~~~--~~~G~~V~I~h~~g~--~t~Y--~hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~hLhfei~~~g~ 71 (84)
.|+++++.. .++|+.++|.|.+|. .+.| +|++++.|++||.|++||.||.+|+||++++|||||||+++..
T Consensus 212 ~V~~~~~~~~~~~~~~~~~i~~~~g~~~~~~y~~~~~~~~~v~~G~~V~~G~~ig~~G~tG~stgpHLHfev~~g~~ 288 (334)
T 3csq_A 212 TCVWRGDASAYLAWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGDLMGHTGIGGNVTGDHWHFNVIDGKE 288 (334)
T ss_dssp EEEEEETTTTEEEEEESSCEECTTSCEECEEEEEECCSSCCCCTTCEECTTSEEEECBCCC----CBEEEEEEESSC
T ss_pred EEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 99999726875531786999978998059999973446456888989768977997578998899878999998984
No 7
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=88.40 E-value=0.62 Score=24.23 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=32.4
Q ss_pred CCCEEEEEECCCCEEEEEECC--C---------CCCCCCCEEEECCEEEEEECC
Q ss_conf 551199999899889984115--6---------344112002203124899805
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSHI--D---------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~hl--~---------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
..+..+.|+..+|... .-|+ + +..|++||.|++||+|.++..
T Consensus 65 ~T~HAigi~t~~G~ev-LiHiGiDTV~L~G~gF~~~V~~Gd~V~~G~~L~~~D~ 117 (162)
T 1ax3_A 65 PTKHAIGLQSDGGREI-LIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp SSSSEEEEESSSSCEE-EEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred CCCCEEEEECCCCCEE-EEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf 6896999997999799-9998645432189831899826999989999999759
No 8
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=87.89 E-value=0.58 Score=24.37 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCEEEEEECCCCEEEEEECC--C---------CCCCCCCEEEECCEEEEEECC
Q ss_conf 551199999899889984115--6---------344112002203124899805
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSHI--D---------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~hl--~---------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
..+..+.|+..+|.. +.-|+ + +..|++||+|++||+|.++..
T Consensus 60 ~T~HAigi~t~~G~e-iLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~ 112 (154)
T 2gpr_A 60 PTKHAFGIQTKSGVE-ILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp TTCSEEEEECTTSCE-EEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred CCCCEEEEECCCCCE-EEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECH
T ss_conf 899799999699989-99997625410389736999738999959999999879
No 9
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=85.26 E-value=0.43 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=27.2
Q ss_pred EEEEECCCCEEEEEE----CCCCCCCCCCEEEECCEEEEEECCCCCCCCCE
Q ss_conf 999998998899841----15634411200220312489980578888856
Q gi|254780683|r 15 TILIRHDDSIVTVYS----HIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQ 61 (84)
Q Consensus 15 ~V~I~h~~g~~t~Y~----hl~~i~v~~G~~V~~G~~IG~vg~tg~~~g~h 61 (84)
.+.|...+-...+.+ -+.++.+++||.|+.||+|+.+..++..+--|
T Consensus 38 l~~iEt~K~~~ei~a~~~G~I~~i~v~eG~~V~~G~~L~~Ie~e~~~d~E~ 88 (93)
T 1k8m_A 38 ICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALKDLEH 88 (93)
T ss_dssp CEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCCTTTC-
T ss_pred EEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCCCCCCC
T ss_conf 999983772897883889999999538999988999999997778755200
No 10
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=84.05 E-value=1.3 Score=22.55 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCCEEEEEECCCCEEEEEEC--CCCCCCCCCEEEECCEEEEE
Q ss_conf 55119999989988998411--56344112002203124899
Q gi|254780683|r 11 ELGNTILIRHDDSIVTVYSH--IDTPYVQKGQKVSRGHTIGL 50 (84)
Q Consensus 11 ~~G~~V~I~h~~g~~t~Y~h--l~~i~v~~G~~V~~G~~IG~ 50 (84)
.-|..|+|...+|-...|.= =.++.|++||.|++||.|-.
T Consensus 188 kgg~~I~I~~~dGe~v~y~IP~G~~L~V~eGD~V~aGq~LTd 229 (249)
T 2jxm_B 188 GFGFDVTIQPEDGDAVVTSILPGPELIVAVGDTVEAGQLLTT 229 (249)
T ss_dssp SSEEEEEEECTTSCCEEEEECSSSCBCCCTTCEECTTCBSBC
T ss_pred CCCEEEEEECCCCCEEEEECCCCCEEEECCCCEECCCCCCCC
T ss_conf 997699998999988999748998147789999858984244
No 11
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=83.93 E-value=0.22 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=20.4
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 11563441120022031248998057
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++++.|++||.|++||+|..+.++
T Consensus 31 G~V~~i~v~~G~~VkkG~~L~~ld~~ 56 (277)
T 2f1m_A 31 GIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp EEEEEECSCTTCEECTTSCSEEECCH
T ss_pred EEEEEEECCCCCEECCCCEEEEECCH
T ss_conf 89999987993998899999998858
No 12
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=83.42 E-value=0.38 Score=25.32 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.3
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 1563441120022031248998057
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
-+.++.|++||.|++||+|..+...
T Consensus 11 ~V~~i~v~eG~~V~kGq~L~~ld~~ 35 (116)
T 2k32_A 11 VIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEEEECSCTTSEECTTCEEEEEECT
T ss_pred EEEEEECCCCCEECCCCEEEEEECH
T ss_conf 9999988898998899899987621
No 13
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=82.92 E-value=1.8 Score=21.81 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=29.1
Q ss_pred CEEEEEECCCCEEEEEE--CCCCCCCCCCEEEECCEEEEE
Q ss_conf 11999998998899841--156344112002203124899
Q gi|254780683|r 13 GNTILIRHDDSIVTVYS--HIDTPYVQKGQKVSRGHTIGL 50 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~--hl~~i~v~~G~~V~~G~~IG~ 50 (84)
+..|+|...+|-...|. .-.++.|++||.|++||.|-.
T Consensus 190 ~~~I~I~t~dGe~v~y~IP~G~~L~V~eGd~VkaGq~LT~ 229 (249)
T 1ci3_M 190 SAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGAALTN 229 (249)
T ss_dssp CEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBSBC
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCC
T ss_conf 8899998999979999769998157778999808984245
No 14
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=82.85 E-value=1.2 Score=22.71 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=30.8
Q ss_pred CCEEEEEECCCCEEEEEECCC-----------CCCCCCCEEEECCEEEEEECC
Q ss_conf 511999998998899841156-----------344112002203124899805
Q gi|254780683|r 12 LGNTILIRHDDSIVTVYSHID-----------TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 12 ~G~~V~I~h~~g~~t~Y~hl~-----------~i~v~~G~~V~~G~~IG~vg~ 53 (84)
.+..+.|+..+|.. +.-|+. +..+++||+|++||+|.++..
T Consensus 66 T~HAigi~t~~G~e-iLiHiGidTv~l~G~gF~~~vk~Gd~V~~G~~L~~~D~ 117 (161)
T 1f3z_A 66 TNHAFSIESDSGVE-LFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp TSSEEEEEETTSCE-EEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CCCEEEEEECCCCE-EEEEECCCHHHCCCCCEEEEECCCCEEECCCEEEEECH
T ss_conf 99799999489989-99997645776189740899768999938989899879
No 15
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=82.31 E-value=0.49 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=20.6
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECC
Q ss_conf 1156344112002203124899805
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~ 53 (84)
+.+.++.|++||.|++||+|.++..
T Consensus 52 G~V~~v~V~~Gd~VkkGd~L~~ld~ 76 (369)
T 1vf7_A 52 GIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEECCCCCEECCCCEEEEECC
T ss_conf 8999998899599889998999886
No 16
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=81.17 E-value=0.57 Score=24.41 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=20.8
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.|++||.|++||.|+.+....
T Consensus 16 v~~~~v~~Gd~V~~g~~l~~iE~~K 40 (74)
T 2d5d_A 16 VLRVLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp EEEECCCTTCEECTTCEEEEEEETT
T ss_pred EEEEECCCCCEEECCCEEEEEEECC
T ss_conf 9999948999993898899999356
No 17
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=80.80 E-value=1.3 Score=22.53 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=30.1
Q ss_pred CEEEEEECCCCEEEEEEC--CCCCCCCCCEEEECCEEEEE
Q ss_conf 119999989988998411--56344112002203124899
Q gi|254780683|r 13 GNTILIRHDDSIVTVYSH--IDTPYVQKGQKVSRGHTIGL 50 (84)
Q Consensus 13 G~~V~I~h~~g~~t~Y~h--l~~i~v~~G~~V~~G~~IG~ 50 (84)
+..|.|...+|-...|.= =..+.|++||.|++||.|-.
T Consensus 191 ~~~I~I~~~dGe~v~~~IP~G~~LiV~eGd~VkaGq~LT~ 230 (292)
T 1q90_A 191 GFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLTN 230 (292)
T ss_dssp CEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBSBC
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCC
T ss_conf 7899998899988999748999789668999808980346
No 18
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=80.75 E-value=0.57 Score=24.43 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=15.5
Q ss_pred CCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 563441120022031248998057
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.|++||.|++||.|+.+-..
T Consensus 10 i~~~~v~~Gd~V~~g~~l~~ie~~ 33 (72)
T 1z6h_A 10 LWKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEECCCCCEECCCCEEEEEECC
T ss_conf 999992798999079899999817
No 19
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=80.50 E-value=0.6 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 563441120022031248998057
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.+++||.|++||.|..+-..
T Consensus 17 i~~~~v~~Gd~V~~g~~l~~iEt~ 40 (80)
T 1qjo_A 17 VTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp EEECCCCTTCEECBTSEEEEEESS
T ss_pred EEEEEECCCCEECCCCEEEEEEEC
T ss_conf 999991797999899989999907
No 20
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=79.66 E-value=0.59 Score=24.32 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=20.7
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.|++||.|++||.|..+-...
T Consensus 19 i~~~~V~~Gd~V~~Gq~l~~iEamK 43 (77)
T 1dcz_A 19 VSKILVKEGDTVKAGQTVLVLEAMK 43 (77)
T ss_dssp EEEECCCTTCEECTTSEEEEEEETT
T ss_pred EEEEECCCCCEECCCCEEEEEEECC
T ss_conf 9999838989986999899999435
No 21
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=79.16 E-value=0.81 Score=23.60 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.6
Q ss_pred CCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 634411200220312489980578
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
.+++|++||.|++||.|+.+....
T Consensus 23 ~~~~V~~Gd~V~~g~~l~~iEamK 46 (80)
T 1bdo_A 23 AKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp SCCSCCTTCEECTTCEEEEEEETT
T ss_pred CCCEECCCCEEECCCEEEEEEECC
T ss_conf 985326899996687899999762
No 22
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=78.56 E-value=0.66 Score=24.09 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=19.5
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 1563441120022031248998057
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
-+.++.|++||.|++||+|.++.++
T Consensus 41 ~V~~v~v~~G~~V~~G~~L~~id~~ 65 (341)
T 3fpp_A 41 QLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEECCCCCEECCCCEEEEECHH
T ss_conf 9999998991998899989998819
No 23
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=78.33 E-value=0.88 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.0
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 1563441120022031248998057
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.+.++.|+.||.|++||+|.++.++
T Consensus 67 ~V~~i~v~~G~~V~kGq~L~~id~~ 91 (359)
T 3lnn_A 67 RIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp EEEECCSCTTCEECTTCEEEEEECS
T ss_pred EEEEEECCCCCEECCCCEEEEECHH
T ss_conf 9999998991998899989999859
No 24
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=77.91 E-value=0.78 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=18.3
Q ss_pred CCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 563441120022031248998057
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
+-++.|+.||.|++||.|+.+...
T Consensus 16 i~~~~V~~Gd~V~~G~~l~~iEa~ 39 (84)
T 2kcc_A 16 LTQYTVEDGGHVEAGSSYAEMEVM 39 (84)
T ss_dssp EEEESSCTTEEECTTCEEEEEECS
T ss_pred EEEEEECCCCEECCCCEEEEEECC
T ss_conf 999995798999179869999847
No 25
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=77.36 E-value=0.97 Score=23.20 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=17.6
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 15634411200220312489980578
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
-+.+..++.||.|++||.|..+-.+.
T Consensus 17 ~i~~w~v~~Gd~V~~gd~l~~vEtdK 42 (79)
T 1ghj_A 17 TVATWHKKPGEAVKRDELIVDIETDK 42 (79)
T ss_dssp EECCCSSCTTSEECSSCEEEEEECSS
T ss_pred EEEEEECCCCCEEECCCEEEEEECCC
T ss_conf 99999927989990899899999586
No 26
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=77.32 E-value=0.79 Score=23.67 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.++.+++||.|++||.|..+-..
T Consensus 19 ~~~~v~~Gd~V~~Gd~l~~iEt~ 41 (81)
T 1gjx_A 19 IAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEECCCCCEEECCCEEEEEEEC
T ss_conf 99982897999089989999938
No 27
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=77.13 E-value=3.8 Score=20.06 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=13.5
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
.++.+++||.|++||.|..+-..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~iE~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEECCCCCEECCCCEEEEEEEC
T ss_conf 99982797999089989999956
No 28
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.19 E-value=2 Score=21.57 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.1
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-++.|+.||.|++||.|..+....
T Consensus 28 i~~~~V~~Gd~V~~Gd~l~~iEt~K 52 (100)
T 2dn8_A 28 LTQYTVEDGGHVEAGSSYAEMEVMK 52 (100)
T ss_dssp EEEESSCTTEEECTTCEEEEEEETT
T ss_pred EEEEEECCCCEECCCCEEEEEECCC
T ss_conf 9999937989985899799998273
No 29
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=75.49 E-value=0.61 Score=24.25 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.2
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.|++||.|++||.|..+....
T Consensus 36 V~~i~V~~Gd~V~~G~~l~~iEsmK 60 (94)
T 2jku_A 36 VVAVSVKPGDAVAEGQEICVIEAMK 60 (94)
T ss_dssp EEEECCCTTCCCCTTCCCEEEEC--
T ss_pred EEEEECCCCCEECCCCEEEEEECCC
T ss_conf 9899818999995898799998036
No 30
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=74.62 E-value=1.4 Score=22.43 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=13.5
Q ss_pred CCCCCCCEEEECCEEEEEECCC
Q ss_conf 3441120022031248998057
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~t 54 (84)
++.|++||.|++||.|..+...
T Consensus 27 ~~~v~~Gd~V~~g~~l~~vEt~ 48 (99)
T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp EECCCTTEEECSSCEEEEEESS
T ss_pred EEECCCCCEECCCCEEEEEECC
T ss_conf 9982898998689989999737
No 31
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=74.01 E-value=1.8 Score=21.77 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=24.7
Q ss_pred EEECCCCEEEEEE----CCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 9998998899841----156344112002203124899805788
Q gi|254780683|r 17 LIRHDDSIVTVYS----HIDTPYVQKGQKVSRGHTIGLSGKSGN 56 (84)
Q Consensus 17 ~I~h~~g~~t~Y~----hl~~i~v~~G~~V~~G~~IG~vg~tg~ 56 (84)
.|....-...+.+ -+.++.++.||.|..||.|+.+..++.
T Consensus 32 ~iE~~K~~~~v~a~~~G~v~~i~v~~Gd~V~~G~~l~~ie~~~~ 75 (85)
T 2k7v_A 32 TVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 75 (85)
T ss_dssp CCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCSS
T ss_pred EEECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCC
T ss_conf 99818837998637898998999689899799999999974887
No 32
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=69.39 E-value=1.5 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=14.8
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 1563441120022031248998057
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
-+.+..++.||.|++||.|..+-.+
T Consensus 18 ~i~~w~v~~Gd~V~~gd~l~eiEtd 42 (80)
T 1pmr_A 18 TVATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp ECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred EEEEEEECCCCEECCCCEEEEEECC
T ss_conf 9999990798998799989999938
No 33
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=66.29 E-value=2.5 Score=21.00 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=17.4
Q ss_pred CCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 15634411200220312489980578
Q gi|254780683|r 30 HIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 30 hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
-+.+..+++||.|++||.|..+-.+.
T Consensus 21 ~i~~W~v~~Gd~V~~gd~l~evEtdK 46 (87)
T 3crk_C 21 TVQRWEKKVGEKLSEGDLLAEIETDX 46 (87)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECSS
T ss_pred EEEEEECCCCCEEECCCEEEEEEECC
T ss_conf 99998639999997899799999077
No 34
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=66.28 E-value=2.2 Score=21.30 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.5
Q ss_pred CCCCCCCCCEEEECCEEEEEECC
Q ss_conf 56344112002203124899805
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~ 53 (84)
+=...++.||.|++||+||++-+
T Consensus 277 l~~~~v~lG~~V~kGq~ig~I~d 299 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEEC
T ss_pred EEEECCCCCCEECCCCEEEEEEC
T ss_conf 99980787999489999999956
No 35
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=66.10 E-value=2.5 Score=21.04 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=17.9
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..|++||.|++||.|..+-.+.
T Consensus 22 g~i~~W~v~~Gd~V~~gd~l~evETdK 48 (108)
T 2dne_A 22 GTIARWEKKEGDKINEGDLIAEVETDK 48 (108)
T ss_dssp EEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred EEEEEEEECCCCEEECCCEEEEEECCC
T ss_conf 999899936999980799899998385
No 36
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=65.80 E-value=7.1 Score=18.62 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=17.0
Q ss_pred CCCCCCCCEEEECCEEEEEEC
Q ss_conf 634411200220312489980
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSG 52 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg 52 (84)
+.+.|+.||.|++||.|+.-.
T Consensus 62 a~L~VkdG~~Vk~g~~la~WD 82 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANWD 82 (190)
T ss_dssp CEESSCTTCEECTTCEEEECC
T ss_pred CEEEECCCCEECCCCEEEEEC
T ss_conf 589986989973898999867
No 37
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=64.97 E-value=2.6 Score=20.93 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=18.3
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..+++||.|.+||.|..+-.+.
T Consensus 42 g~I~~W~vk~GD~V~~gd~L~evETDK 68 (128)
T 1y8o_B 42 GTVQRWEKKVGEKLSEGDLLAEIETDK 68 (128)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred EEEEEEEECCCCEEECCCEEEEEECCC
T ss_conf 999899957999980899799998286
No 38
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=64.26 E-value=2.5 Score=21.05 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=23.0
Q ss_pred EEEECC----CCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 984115----634411200220312489980578
Q gi|254780683|r 26 TVYSHI----DTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 26 t~Y~hl----~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
.+.+.+ =++.|++||.|++||.|..+....
T Consensus 1079 ~V~Ap~~GnVwkv~V~~Gd~V~~Gd~l~IlEAMK 1112 (1150)
T 3hbl_A 1079 HIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp EEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred EEECCCCEEEEEEEECCCCEECCCCEEEEEEHHC
T ss_conf 7706898478999808999979999899996520
No 39
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.51 E-value=3.2 Score=20.43 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=9.6
Q ss_pred CCCCCCCEEEECCEEEEEECC
Q ss_conf 344112002203124899805
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~ 53 (84)
+..+++||.|++||.|..+-.
T Consensus 26 ~W~v~~Gd~V~~gd~l~evEt 46 (98)
T 2dnc_A 26 KWLKKEGEAVSAGDALCEIET 46 (98)
T ss_dssp EESSCTTCEECTTSEEEEEEC
T ss_pred EEEECCCCEEECCCEEEEEEC
T ss_conf 999089999938998999985
No 40
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=62.29 E-value=2.3 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
=++.|++||.|++||.|..+...
T Consensus 1107 WKV~Vk~GD~VkaGq~L~ILEAM 1129 (1165)
T 2qf7_A 1107 SRVFVSSGQAVNAGDVLVSIEAM 1129 (1165)
T ss_dssp EEECCSSCCCC---CEEEEEEC-
T ss_pred EEEEECCCCEECCCCEEEEEEHH
T ss_conf 99997999997999989999663
No 41
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=61.28 E-value=2 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.3
Q ss_pred CCCCCCCEEEECCEEEEEECC
Q ss_conf 344112002203124899805
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~ 53 (84)
++.|++||.|++||.|..+..
T Consensus 662 ~v~V~~Gd~V~~G~~l~vlEA 682 (718)
T 3bg3_A 662 DIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp EECSCTTCCBCTTCCCEEEES
T ss_pred EEEECCCCEECCCCEEEEEEH
T ss_conf 999699998799999999974
No 42
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=61.20 E-value=3 Score=20.58 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.5
Q ss_pred CCCCCCCCEEEECCEEEEEECCC
Q ss_conf 63441120022031248998057
Q gi|254780683|r 32 DTPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 32 ~~i~v~~G~~V~~G~~IG~vg~t 54 (84)
-++.|++||.|++||.+..+-..
T Consensus 624 v~v~V~~Gd~V~aGq~L~VLEAM 646 (681)
T 3n6r_A 624 VKVDVEVGQEVQEGQALCTIEAM 646 (681)
T ss_dssp EEECCCTTCEECTTCEEEEEECS
T ss_pred EEEECCCCCEECCCCEEEEEEEE
T ss_conf 99945994998898989999997
No 43
>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099}
Probab=54.94 E-value=3.8 Score=20.08 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.2
Q ss_pred CCCCCCCEEEECCEEEEEECCC
Q ss_conf 3441120022031248998057
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~t 54 (84)
...++.||.|++||+||++-+.
T Consensus 269 ~~~~~~G~~V~kGq~lg~i~~~ 290 (332)
T 2qj8_A 269 EPRCSVMDEVEQGDVVGVLHPM 290 (332)
T ss_dssp EECSCTTCEECTTCEEEEEECT
T ss_pred EECCCCCCEECCCCEEEEEECC
T ss_conf 8758989998899999998177
No 44
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=53.31 E-value=4.5 Score=19.67 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=13.6
Q ss_pred CCCCC-CCCCEEEECCEEEEEECC
Q ss_conf 56344-112002203124899805
Q gi|254780683|r 31 IDTPY-VQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 31 l~~i~-v~~G~~V~~G~~IG~vg~ 53 (84)
++++. ++.||.|++||+|.++.+
T Consensus 132 I~~l~v~~~Gd~VkkGq~L~~lds 155 (407)
T 3h9i_A 132 IDKVYPLTVGDKVQKGTPLLDLTI 155 (407)
T ss_dssp CBCCCSCCSSCEESTTCCCEEEEC
T ss_pred EEEEEECCCCCEECCCCEEEEECC
T ss_conf 999950689998858988999878
No 45
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=51.13 E-value=2.6 Score=20.94 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=18.6
Q ss_pred ECCCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 115634411200220312489980578
Q gi|254780683|r 29 SHIDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 29 ~hl~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+-+.+..|++||.|++||.|..+-.+.
T Consensus 18 g~I~~Wlvk~GD~V~~gd~L~evETDK 44 (229)
T 1zy8_K 18 GNIVKWLKKEGEAVSAGDALCEIETDK 44 (229)
T ss_dssp ---------------------------
T ss_pred EEEEEEEECCCCEECCCCEEEEEEECC
T ss_conf 999899818999977999799999286
No 46
>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} PDB: 3lwu_A*
Probab=45.06 E-value=7.5 Score=18.50 Aligned_cols=22 Identities=5% Similarity=-0.165 Sum_probs=18.2
Q ss_pred CCCCCCCEEEECCEEEEEECCC
Q ss_conf 3441120022031248998057
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~t 54 (84)
...++.|+.|++||+||++-+.
T Consensus 302 ~~~~~~G~~V~~G~~lg~i~d~ 323 (368)
T 3fmc_A 302 EYLGKVGVPMKATDPLVNLLRL 323 (368)
T ss_dssp EECSCTTCCBCTTCEEEEEECG
T ss_pred EECCCCCCEECCCCEEEEEECC
T ss_conf 8779997997899889999778
No 47
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=37.40 E-value=22 Score=16.02 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=27.9
Q ss_pred CEEEEEECCCCEE---EEEECCCCCCCCCCEEEECCEEEEEECC
Q ss_conf 1199999899889---9841156344112002203124899805
Q gi|254780683|r 13 GNTILIRHDDSIV---TVYSHIDTPYVQKGQKVSRGHTIGLSGK 53 (84)
Q Consensus 13 G~~V~I~h~~g~~---t~Y~hl~~i~v~~G~~V~~G~~IG~vg~ 53 (84)
|..|.|+..+|-. ++-..+ ++.|++||.|++||.|-.-.|
T Consensus 191 ~~~v~I~~~~G~~v~~~iP~Gp-~l~V~~G~~v~~~qpLT~nPN 233 (251)
T 1e2w_A 191 GFEVSIEKANGEVVVDKIPAGP-DLIVKEGQTVQADQPLTNNPN 233 (251)
T ss_dssp CEEEEEECTTSCEEEEEECSSS-CBCCCTTCEECTTCBCBCCCC
T ss_pred CEEEEEECCCCCEEEEECCCCC-EEEEECCCEEECCCCCCCCCC
T ss_conf 5799998789989878328998-588708988867985555998
No 48
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=36.53 E-value=13 Score=17.19 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.9
Q ss_pred CCCCCCCEEEECCEEEEEECCCC
Q ss_conf 34411200220312489980578
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
.+.++.||+|++||+|.++=.+.
T Consensus 379 ~~~~~~G~~V~~g~~l~~i~~~~ 401 (433)
T 1brw_A 379 VLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp EESCCTTCEECTTCEEEEEEESS
T ss_pred EEECCCCCEECCCCEEEEEECCC
T ss_conf 88436849967999189997688
No 49
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=34.82 E-value=14 Score=17.02 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.0
Q ss_pred CCCCCCEEEECCEEEEEECCC
Q ss_conf 441120022031248998057
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.||+|++||+|.++=.+
T Consensus 383 ~~~k~Gd~V~~g~~l~~i~~~ 403 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIHSN 403 (436)
T ss_dssp ESCCTTCEECTTSEEEEEEES
T ss_pred EECCCCCEECCCCEEEEEECC
T ss_conf 835795996799918999748
No 50
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=34.76 E-value=15 Score=16.96 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.5
Q ss_pred CCCCCCEEEECCEEEEEECCCC
Q ss_conf 4411200220312489980578
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~tg 55 (84)
+.++.||.|++||+|.++=.+.
T Consensus 415 l~~k~Gd~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 415 LLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp ECSCTTCEECTTCEEEEEEESS
T ss_pred EECCCCCEECCCCEEEEEECCC
T ss_conf 6256869856999189996698
No 51
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8}
Probab=33.98 E-value=15 Score=16.90 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=18.8
Q ss_pred CCCCCCCEEEECCEEEEEECCCC
Q ss_conf 34411200220312489980578
Q gi|254780683|r 33 TPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 33 ~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
.+.++.||.|++||+|.++=.+.
T Consensus 371 ~~~~k~G~~V~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 371 YLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp EESCCTTCEECTTSEEEEEEECS
T ss_pred EEECCCCCEECCCCEEEEEECCC
T ss_conf 88625849867999189996795
No 52
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=29.10 E-value=16 Score=16.69 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=18.0
Q ss_pred CCCCCCEEEECCEEEEEECCC
Q ss_conf 441120022031248998057
Q gi|254780683|r 34 PYVQKGQKVSRGHTIGLSGKS 54 (84)
Q Consensus 34 i~v~~G~~V~~G~~IG~vg~t 54 (84)
+.++.||+|++||+|.++=.+
T Consensus 385 ~~~k~G~~V~~g~~l~~i~~~ 405 (440)
T 2tpt_A 385 DMARLGDQVDGQRPLAVIHAK 405 (440)
T ss_dssp SCCCTTCEEBTTBCSEEEEES
T ss_pred EECCCCCEECCCCEEEEEECC
T ss_conf 842686986799908999749
No 53
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=24.06 E-value=13 Score=17.19 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=16.6
Q ss_pred CCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 5634411200220312489980578
Q gi|254780683|r 31 IDTPYVQKGQKVSRGHTIGLSGKSG 55 (84)
Q Consensus 31 l~~i~v~~G~~V~~G~~IG~vg~tg 55 (84)
|.++.+++|+.|.-|++|+.+...+
T Consensus 56 l~~i~~~~G~~v~vG~~i~~i~~~~ 80 (428)
T 3dva_I 56 VLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp -------------------------
T ss_pred EEEEEECCCCEEECCCEEEEEECCC
T ss_conf 9999848999980799899995577
Done!