RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus
Liberibacter asiaticus str. psy62]
         (84 letters)



>gnl|CDD|183257 PRK11649, PRK11649, putative peptidase; Provisional.
          Length = 439

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 13  GNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAIA 72
           GN + IRH     T Y H+    V+ GQKV RG  I LSG +G +  P +H+E+  N  A
Sbjct: 344 GNYVAIRHGRQYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQA 403

Query: 73  MDPIKFLEEKIP 84
           ++P   L  K+P
Sbjct: 404 VNP---LTAKLP 412


>gnl|CDD|182796 PRK10871, nlpD, lipoprotein NlpD; Provisional.
          Length = 319

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 2   VIYVGNDLVELGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQ 61
           V+Y GN L   GN I+I+H+D  ++ Y+H DT  V++ Q+V  G  I   G +G +   +
Sbjct: 240 VVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSS-TR 298

Query: 62  VHFELRKNAIAMDPIKFLEEK 82
           +HFE+R    +++P+++L ++
Sbjct: 299 LHFEIRYKGKSVNPLRYLPQR 319


>gnl|CDD|183249 PRK11637, PRK11637, AmiB activator; Provisional.
          Length = 428

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 13  GNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAIA 72
           G  +++ H    +++Y +  +  V  G +V  G  I L G SG    P ++FE+R+   A
Sbjct: 360 GLVVVVEHGKGDMSLYGYNQSALVSVGAQVRAGQPIALVGSSGGQGRPSLYFEIRRQGQA 419

Query: 73  MDPIKFL 79
           ++P  +L
Sbjct: 420 VNPQPWL 426


>gnl|CDD|163347 TIGR03599, YloV, DAK2 domain fusion protein YloV.  This model
           describes a protein family that contains an N-terminal
           DAK2 domain (pfam02734), so named because of similarity
           to the dihydroxyacetone kinase family family. The
           GTP-binding protein CgtA (a member of the obg family) is
           a bacterial GTPase associated with ribosome biogenesis,
           and it has a characteristic extension (TIGR03595) in
           certain lineages. This protein family described here was
           found, by the method of partial phylognetic profiling,
           to have a phylogenetic distribution strongly correlated
           to that of TIGR03595. This correlation implies some form
           of functional coupling.
          Length = 530

 Score = 31.4 bits (72), Expect = 0.056
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 7   NDLVELGNTILIRHDDSIVTVYSHIDTPY--VQKGQKVSRGHTI 48
            +L +LG+++++  DD +V V+ H + P   ++ GQK      I
Sbjct: 244 KELEKLGDSLVVVGDDDLVKVHVHTNDPGLVLEYGQKYGELIKI 287


>gnl|CDD|180005 PRK05305, PRK05305, phosphatidylserine decarboxylase; Provisional.
          Length = 206

 Score = 24.8 bits (55), Expect = 5.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34  PYVQKGQKVSRGHTIGL 50
            YV++G +V RG   GL
Sbjct: 154 CYVKEGDEVERGERFGL 170


>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated.
          Length = 80

 Score = 24.6 bits (54), Expect = 5.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34 PYVQKGQKVSRGHTIGL 50
          PYV+ G  V+ G  +GL
Sbjct: 24 PYVEVGDAVAAGDVVGL 40


>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase.
          Length = 536

 Score = 24.3 bits (52), Expect = 7.8
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 15  TILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFELRKNAIAMD 74
           TI+I HD  +V V + +   Y   G    +    GL  +   A H QVH    + + A+D
Sbjct: 101 TIMILHD-KVVDVLNPLAREYKSIG--TVKKELAGLQEELSKA-HQQVHISEARVSTALD 156

Query: 75  PIKFLEEKI 83
            +  +EE +
Sbjct: 157 KLAHMEELV 165


>gnl|CDD|148644 pfam07154, DUF1392, Protein of unknown function (DUF1392).  This
          family consists of several hypothetical cyanobacterial
          proteins of around 150 residues in length which seem to
          be specific to Anabaena species. The function of this
          family is unknown.
          Length = 150

 Score = 24.0 bits (52), Expect = 8.9
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 8/48 (16%)

Query: 20 HDDS-IVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQVHFEL 66
          +DD    ++ S  +  Y  K Q ++ G       +      P   F L
Sbjct: 50 YDDCWNYSIESDNEIIYATKHQIIATGQF-----QPTTLSKP--AFAL 90


>gnl|CDD|129268 TIGR00164, PS_decarb_rel, phosphatidylserine decarboxylase
           precursor-related protein.  It is unclear whether this
           protein is a form of phosphatidylserine decarboxylase or
           is a related enzyme. It is found in Neisseria
           gonorrhoeae, Mycobacterium tuberculosis, and several
           archaeal species, all of which lack known
           phosphatidylserine decarboxylase.
          Length = 189

 Score = 24.0 bits (52), Expect = 9.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)

Query: 35  YVQKGQKVSRGHTIGL 50
           YV++G+KVSRG  IG+
Sbjct: 135 YVKEGEKVSRGQRIGM 150


>gnl|CDD|178340 PLN02739, PLN02739, serine acetyltransferase.
          Length = 355

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 12  LGNTILIRHDDSIVTVYSHIDTPYVQKGQKVSRGHTIGLSGKSGNAQHPQV 62
           +G  IL+ H   +V      +T  +     +  G T+G +GK    +HP++
Sbjct: 214 IGKGILLDHGTGVVIG----ETAVIGDRVSILHGVTLGGTGKETGDRHPKI 260


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,350,257
Number of extensions: 68551
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 17
Length of query: 84
Length of database: 5,994,473
Length adjustment: 53
Effective length of query: 31
Effective length of database: 4,849,249
Effective search space: 150326719
Effective search space used: 150326719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (22.9 bits)