HHsearch alignment for GI: 254780684 and conserved domain: CHL00059
>CHL00059 atpA ATP synthase CF1 alpha subunit.
Probab=100.00 E-value=0 Score=899.68 Aligned_cols=414 Identities=25% Similarity=0.367 Sum_probs=391.9
Q ss_pred HHHHHHHHHHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99999997413342-12012899995258999826888873518999569960799999741997999980485574678
Q gi|254780684|r 6 ETLAQLAEDYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 6 ~~l~~~~~~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
T Consensus 11 ~~i~~~i~~~~~~~~~~e~G~V~~v~DGia~v~GL~-~~~~~Elv~f~~g---~~G~vlnLe~~~vg~vllg~~~~i~eG 86 (501)
T CHL00059 11 NIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLD-EVMAGELVEFEEG---TIGIALNLESNNVGVVLMGDGLMIQEG 86 (501)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCC-CCCCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 999999983587775203479999706279982673-1255864996899---879998437880699997698776899
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
T Consensus 87 ~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDgkg~i~~~-~~~pie~~aP~~~~R~~V~epL~TGIkaID~l~PiGrGQR 165 (501)
T CHL00059 87 SSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISAS-ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQR 165 (501)
T ss_pred CEEEECCCEEEEECCHHHCCCEECCCEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCE
T ss_conf 988857972477457523147406877544799988987-5010437997850446667423234211100367667756
Q ss_pred EEEECCCCCCHHHHH--HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 375266788999999--998740789838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 164 IGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll--~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
T Consensus 166 ~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGeR~reV~~~i~~l~~~gam~~TvvV~Atadepa~lr~~Apyaa~a 245 (501)
T CHL00059 166 ELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAA 245 (501)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67755788447799999998524688489999855627789999999975697103699961799999999999999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEEECCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367--8852355433342167
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVLVDGD 318 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~~~~d 318 (438)
T Consensus 246 IAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFylhsrLlERa~kl~~~~ggGSiTalpivet~~~ 325 (501)
T CHL00059 246 LAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSG 325 (501)
T ss_pred HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCC
T ss_conf 99999977982899986826988999998986489997667896288785789877650578999884788889982388
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64202789998612608987042775897131144564000221208999999999999999999999999985234469
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g 398 (438)
T Consensus 326 D~s~yIptnviSItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~k~~k~va~~lrl~laq~~el~~f~~f~~---~ 402 (501)
T CHL00059 326 DVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFAS---D 402 (501)
T ss_pred CCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_conf 6455554104440574299856555277774345455511256176789999987787999998999999998623---3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 99899999999999999835998889997
Q gi|254780684|r 399 VDLILDKAVHQVPIIYDFLKQSPSDLSSE 427 (438)
Q Consensus 399 ~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~ 427 (438)
T Consensus 403 ld~~t~~~l~rg~r~~e~lkQ~~~~p~~~ 431 (501)
T CHL00059 403 LDKATQNQLARGQRLRELLKQSQSAPLTV 431 (501)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 59999999998999999867888999699