HHsearch alignment for GI: 254780684 and conserved domain: CHL00060
>CHL00060 atpB ATP synthase CF1 beta subunit.
Probab=100.00 E-value=0 Score=860.89 Aligned_cols=412 Identities=26% Similarity=0.388 Sum_probs=371.8
Q ss_pred EEEEEEEEEECCEEEEECCCCC-CCCCCEEEEECCC-----CCEEEEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCC-
Q ss_conf 2012899995258999826888-8735189995699-----60799999741-99799998048557467888997288-
Q gi|254780684|r 21 VQGGYISSITSVYYTVTCLSQY-VCLGDFVVHQGKN-----SDNLGQVIRIN-LDIVYICPVGIGEEISLGDLVFHWGR- 92 (438)
Q Consensus 21 ~~~G~V~~V~G~ii~v~Gl~~~-v~iGelv~i~~~~-----~~v~geVi~~~-~~~~~l~~~~~~~gI~~G~~V~~~g~- 92 (438)
T Consensus 8 k~~GrV~~V~G~VVdv~fp~~~lp~i~~~l~~~~~~~~g~~~~~~~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~ 87 (480)
T CHL00060 8 KNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAP 87 (480)
T ss_pred CCCCEEEEEEEEEEEEEECCCCCCHHHHEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 67608999993269999378774214443242477877764418999999946997999965687788998999958995
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
T Consensus 88 l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~-~~~pi~~~aP~~~~r~~~~e~leTGIkaID~l~pigkGQRigIfggaGv 166 (480)
T CHL00060 88 LSVPVGGATLGRIFNVLGEPVDNLGPVDTR-TTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGV 166 (480)
T ss_pred EEEEECHHHCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 498728533168788888835788998766-5032567899855556778611027044431254003668876568998
Q ss_pred CHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC-C-------CCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999998740---78983899312465223889999864277-5-------532898415778803444444567778
Q gi|254780684|r 173 GKSTLLSMFARS---DCFDKVIISLVGERGREVREFIEDYLGDN-L-------KKSVVVVATSDESPILRKMAPLTAVTI 241 (438)
Q Consensus 173 GKt~Ll~~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~-l-------~~tvvv~~t~d~~~~~r~~a~~~a~~i 241 (438)
T Consensus 167 GKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl~~~~~~~s~~vlV~~~~depp~~R~~~~~~a~ti 246 (480)
T CHL00060 167 GKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTM 246 (480)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 87899999996120037988999996677367999999998718553355443048999735678768899999998889
Q ss_pred HHHHHHCC-CCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88864267-98899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 242 AEYFSSKG-DNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 242 AEyfr~~G-~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
T Consensus 247 AEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L~ER~~~~--~~GSITa~~~V~v~~DD~ 324 (480)
T CHL00060 247 AEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST--KEGSITSIQAVYVPADDL 324 (480)
T ss_pred HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCCCC
T ss_conf 999987489708999546289998887899862799986678964888877888863278--887415677897037766
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 202789998612608987042775897131144564000221-2089999999999999999999999999852344699
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV 399 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~ 399 (438)
T Consensus 325 tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~a~~v~~~L~~Y~el~diIailG~de-L 403 (480)
T CHL00060 325 TDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDE-L 403 (480)
T ss_pred CCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C
T ss_conf 676145552212514998365887899897375201000479764899999999999999999899999999758642-7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCC-------CCCCHHHHHHHHHH
Q ss_conf 98999999999999998359988-------89997689999987
Q gi|254780684|r 400 DLILDKAVHQVPIIYDFLKQSPS-------DLSSEDVFQEITKK 436 (438)
Q Consensus 400 d~~~d~~i~~~~~i~~fl~Q~~~-------e~~~~~~~~~~~~~ 436 (438)
T Consensus 404 s~~dk~~v~rar~l~~fl~Qpf~~~e~ftg~~g~~v~l~~t~~~ 447 (480)
T CHL00060 404 SEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRG 447 (480)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEHHHHHHH
T ss_conf 98899999999999999658522345415999538609999999