HHsearch alignment for GI: 254780684 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=98.05 E-value=0.00015 Score=52.10 Aligned_cols=190 Identities=21% Similarity=0.179 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHH-HHCC-CCCEEEEECCCCCHHHHHHHHHHHCC---CCC
Q ss_conf 001112458752002--2358503752667889999999987-4078-98389931246522388999986427---755
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFA-RSDC-FDKVIISLVGERGREVREFIEDYLGD---NLK 215 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~-~~~~-~dv~V~alIGeR~rev~efi~~~~~~---~l~ 215 (438)
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~ 82 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIE 82 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHH
T ss_conf 65689974188883689889978999938998689999999997762698589999206989999999880997789754
Q ss_pred --CEEEEEECCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf --328984157788034------444445677788886426798899970989999998766540477843236632455
Q gi|254780684|r 216 --KSVVVVATSDESPIL------RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVF 287 (438)
Q Consensus 216 --~tvvv~~t~d~~~~~------r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~ 287 (438)
T Consensus 83 ~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~--------------~~~r 147 (260)
T COG0467 83 KGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDP--------------ALVR 147 (260)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCH--------------HHHH
T ss_conf 440687631211125420104665228999999999998628-9889996630776652782--------------5789
Q ss_pred HHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC-CCCCC
Q ss_conf 42004444431136788523554333421676420278999861260898704277589713-11445
Q gi|254780684|r 288 SELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYP-PVDPL 354 (438)
Q Consensus 288 ~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~P-aid~~ 354 (438)
T Consensus 148 ~~~~~l~----~~~~~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~ 208 (260)
T COG0467 148 RILLLLK----RFLKKLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRIL 208 (260)
T ss_pred HHHHHHH----HHHHHCC-EEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 9999999----8765068-48999974433466656--614216899999977722572488899998