HHsearch alignment for GI: 254780684 and conserved domain: COG0467

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=98.05  E-value=0.00015  Score=52.10  Aligned_cols=190  Identities=21%  Similarity=0.179  Sum_probs=110.6

Q ss_pred             CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHH-HHCC-CCCEEEEECCCCCHHHHHHHHHHHCC---CCC
Q ss_conf             001112458752002--2358503752667889999999987-4078-98389931246522388999986427---755
Q gi|254780684|r  143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFA-RSDC-FDKVIISLVGERGREVREFIEDYLGD---NLK  215 (438)
Q Consensus       143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~-~~~~-~dv~V~alIGeR~rev~efi~~~~~~---~l~  215 (438)
T Consensus         3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~   82 (260)
T COG0467           3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIE   82 (260)
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHH
T ss_conf             65689974188883689889978999938998689999999997762698589999206989999999880997789754


Q ss_pred             --CEEEEEECCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             --328984157788034------444445677788886426798899970989999998766540477843236632455
Q gi|254780684|r  216 --KSVVVVATSDESPIL------RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVF  287 (438)
Q Consensus       216 --~tvvv~~t~d~~~~~------r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~  287 (438)
T Consensus        83 ~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~--------------~~~r  147 (260)
T COG0467          83 KGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDP--------------ALVR  147 (260)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCH--------------HHHH
T ss_conf             440687631211125420104665228999999999998628-9889996630776652782--------------5789


Q ss_pred             HHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC-CCCCC
Q ss_conf             42004444431136788523554333421676420278999861260898704277589713-11445
Q gi|254780684|r  288 SELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYP-PVDPL  354 (438)
Q Consensus       288 ~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~P-aid~~  354 (438)
T Consensus       148 ~~~~~l~----~~~~~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~  208 (260)
T COG0467         148 RILLLLK----RFLKKLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRIL  208 (260)
T ss_pred             HHHHHHH----HHHHHCC-EEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             9999999----8765068-48999974433466656--614216899999977722572488899998