HHsearch alignment for GI: 254780684 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=95.18 E-value=0.13 Score=30.69 Aligned_cols=56 Identities=38% Similarity=0.412 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHH-HHCCCCCEEEEECCCCC
Q ss_conf 001112458752002--2358503752667889999999987-40789838993124652
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFA-RSDCFDKVIISLVGERG 199 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~-~~~~~dv~V~alIGeR~ 199 (438)
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLY-VsGEES 131 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLY-VSGEES 131 (456)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE-EECCCC
T ss_conf 42357818887653677236617997368987798999999999870595799-967767