HHsearch alignment for GI: 254780684 and conserved domain: COG1157
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=1021.39 Aligned_cols=428 Identities=45% Similarity=0.693 Sum_probs=399.5
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-C-CCEEEEEEEECCCEEEEEECCCC
Q ss_conf 23699999999741-334212012899995258999826888873518999569-9-60799999741997999980485
Q gi|254780684|r 2 QKNLETLAQLAEDY-SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-N-SDNLGQVIRINLDIVYICPVGIG 78 (438)
Q Consensus 2 ~~~l~~l~~~~~~~-~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~-~~v~geVi~~~~~~~~l~~~~~~ 78 (438)
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~G~v~~v~G~~lea~g~--~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~ 80 (441)
T COG1157 3 SRDLTHLDSLELALRNTDPYKRRGRLTRVTGLLLEAVGP--QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPV 80 (441)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEECC--CCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf 414567654243102477616987899985249998448--876235699996588874147999972876899626765
Q ss_pred CCCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57467888997288-55524666886543077630478877755530121125433300013311001112458752002
Q gi|254780684|r 79 EEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTP 157 (438)
Q Consensus 79 ~gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~p 157 (438)
T Consensus 81 ~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~-~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT 159 (441)
T COG1157 81 EGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPD-GTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLT 159 (441)
T ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCC
T ss_conf 5677887897459754236686665410066888577899998-763231457997821026546645456144401002
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 235850375266788999999998740789838993124652238899998642-7755328984157788034444445
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPL 236 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~ 236 (438)
T Consensus 160 ~G~GQRiGIFAgsGVGKStLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~ 239 (441)
T COG1157 160 CGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAF 239 (441)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 24674678871699868999999962466987999976066405999999860233035269999789889899988899
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEEC
Q ss_conf 67778888642679889997098999999876654047784323663245542004444431136788523554333421
Q gi|254780684|r 237 TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD 316 (438)
Q Consensus 237 ~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~ 316 (438)
T Consensus 240 ~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~--~~GsITafYTVLve 317 (441)
T COG1157 240 TATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG--DKGSITAFYTVLVE 317 (441)
T ss_pred HHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CCCCEEEEEEEEEE
T ss_conf 9999999998679859999613889999998888752899866898955988748988604899--99817899999850
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 67642027899986126089870427758971311445640002212089999999999999999999999999852344
Q gi|254780684|r 317 GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYR 396 (438)
Q Consensus 317 ~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~ 396 (438)
T Consensus 318 GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~ 397 (441)
T COG1157 318 GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQ 397 (441)
T ss_pred CCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 68888850456664226528973868855999974467778777664089999999999999999988778999863856
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 69998999999999999998359988899976899999870
Q gi|254780684|r 397 PGVDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKL 437 (438)
Q Consensus 397 ~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~~~~~~~~~l 437 (438)
T Consensus 398 ~G~D~~~D~Ai~~~p~i~~fL~Q~~~e~~~~~---~t~~~L 435 (441)
T COG1157 398 KGSDPELDKAIKLYPKIEQFLKQGIDEKSSFE---ETLEQL 435 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH
T ss_conf 78987889999750999999718954457999---999999