HHsearch alignment for GI: 254780684 and conserved domain: COG1157

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00  E-value=0  Score=1021.39  Aligned_cols=428  Identities=45%  Similarity=0.693  Sum_probs=399.5

Q ss_pred             CHHHHHHHHHHHHH-CCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-C-CCEEEEEEEECCCEEEEEECCCC
Q ss_conf             23699999999741-334212012899995258999826888873518999569-9-60799999741997999980485
Q gi|254780684|r    2 QKNLETLAQLAEDY-SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-N-SDNLGQVIRINLDIVYICPVGIG   78 (438)
Q Consensus         2 ~~~l~~l~~~~~~~-~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~-~~v~geVi~~~~~~~~l~~~~~~   78 (438)
T Consensus         3 ~~~~~~l~~~~~~~~~~~~~~~~G~v~~v~G~~lea~g~--~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~   80 (441)
T COG1157           3 SRDLTHLDSLELALRNTDPYKRRGRLTRVTGLLLEAVGP--QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPV   80 (441)
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEECC--CCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf             414567654243102477616987899985249998448--876235699996588874147999972876899626765


Q ss_pred             CCCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             57467888997288-55524666886543077630478877755530121125433300013311001112458752002
Q gi|254780684|r   79 EEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTP  157 (438)
Q Consensus        79 ~gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~p  157 (438)
T Consensus        81 ~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~-~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT  159 (441)
T COG1157          81 EGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPD-GTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLT  159 (441)
T ss_pred             CCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCC
T ss_conf             5677887897459754236686665410066888577899998-763231457997821026546645456144401002


Q ss_pred             HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf             235850375266788999999998740789838993124652238899998642-7755328984157788034444445
Q gi|254780684|r  158 LCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPL  236 (438)
Q Consensus       158 ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~  236 (438)
T Consensus       160 ~G~GQRiGIFAgsGVGKStLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~  239 (441)
T COG1157         160 CGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAF  239 (441)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             24674678871699868999999962466987999976066405999999860233035269999789889899988899


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEEC
Q ss_conf             67778888642679889997098999999876654047784323663245542004444431136788523554333421
Q gi|254780684|r  237 TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD  316 (438)
Q Consensus       237 ~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~  316 (438)
T Consensus       240 ~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~--~~GsITafYTVLve  317 (441)
T COG1157         240 TATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG--DKGSITAFYTVLVE  317 (441)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CCCCEEEEEEEEEE
T ss_conf             9999999998679859999613889999998888752899866898955988748988604899--99817899999850


Q ss_pred             CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             67642027899986126089870427758971311445640002212089999999999999999999999999852344
Q gi|254780684|r  317 GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYR  396 (438)
Q Consensus       317 ~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~  396 (438)
T Consensus       318 GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~  397 (441)
T COG1157         318 GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQ  397 (441)
T ss_pred             CCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             68888850456664226528973868855999974467778777664089999999999999999988778999863856


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             69998999999999999998359988899976899999870
Q gi|254780684|r  397 PGVDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKL  437 (438)
Q Consensus       397 ~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~~~~~~~~~l  437 (438)
T Consensus       398 ~G~D~~~D~Ai~~~p~i~~fL~Q~~~e~~~~~---~t~~~L  435 (441)
T COG1157         398 KGSDPELDKAIKLYPKIEQFLKQGIDEKSSFE---ETLEQL  435 (441)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH
T ss_conf             78987889999750999999718954457999---999999