HHsearch alignment for GI: 254780684 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=93.56 E-value=0.61 Score=25.84 Aligned_cols=147 Identities=12% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCCCCEEEEECCCCCEEEEEEEECCCEE---EEEECCCCCCCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHC--CCC
Q ss_conf 8735189995699607999997419979---9998048557467888997288-555246668865430776304--788
Q gi|254780684|r 43 VCLGDFVVHQGKNSDNLGQVIRINLDIV---YICPVGIGEEISLGDLVFHWGR-FRISPSACWCGRVINALGKPI--DGD 116 (438)
Q Consensus 43 v~iGelv~i~~~~~~v~geVi~~~~~~~---~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~Pl--Dg~ 116 (438)
T Consensus 73 l~vg~v~e~id~~~----~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv---~vLp~~~Dp~V~~M~v~e~ 145 (406)
T COG1222 73 LIVGTVLEVLDDGR----AIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIV---RVLPPEVDPRVSVMEVEEK 145 (406)
T ss_pred CEEEEEEEECCCCE----EEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEE---EECCCCCCCHHHEEEECCC
T ss_conf 56899999817861----8997079971887346876987869988899857761456---6178755762020011258
Q ss_pred CCCCCCCEEEEECCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 777555301211254333000--13311001112458752002235850--37526678899999999874078983899
Q gi|254780684|r 117 DSLGKGDLSMEIMSKVPPAMN--RQRVEKGFKTGIRVIDIFTPLCHGQR--IGVFAGSGIGKSTLLSMFARSDCFDKVII 192 (438)
Q Consensus 117 ~~l~~~~~~~~i~~~~p~p~~--R~~i~e~L~TGIr~ID~l~pig~GQR--~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~ 192 (438)
T Consensus 146 PdvtY~----dI-----GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 146 PDVTYE----DI-----GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred CCCCHH----HC-----CCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 987865----33-----588999999999840336688899974999997127668999758899999872058669994
Q ss_pred EECCCCCHHHHHHHHHHHCCC
Q ss_conf 312465223889999864277
Q gi|254780684|r 193 SLVGERGREVREFIEDYLGDN 213 (438)
Q Consensus 193 alIGeR~rev~efi~~~~~~~ 213 (438)
T Consensus 217 v--------gSElVqKYiGEG 229 (406)
T COG1222 217 V--------GSELVQKYIGEG 229 (406)
T ss_pred C--------CHHHHHHHHCCC
T ss_conf 2--------199999983411