HHsearch alignment for GI: 254780684 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=94.21 E-value=0.47 Score=26.67 Aligned_cols=159 Identities=20% Similarity=0.195 Sum_probs=91.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCC-------CCCEEEEEECCCCCHHH-
Q ss_conf 5850375266788999999998740-78983899312465223889999864277-------55328984157788034-
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDN-------LKKSVVVVATSDESPIL- 230 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~-------l~~tvvv~~t~d~~~~~- 230 (438)
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~--T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL--TVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECH--HHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCC
T ss_conf 6769999888985488999999998870895489998403--59999998886388716877506268999324542257
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEE
Q ss_conf 44444567778888642679889997098999999876654047784323663245542004444431136788523554
Q gi|254780684|r 231 RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAV 310 (438)
Q Consensus 231 r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~ 310 (438)
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dVi-IIDSls~~~~~~~-------------------~~~vl~fm~~~r~l~d~-gK-vIi 162 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVI-IIDSLSAFATYDS-------------------EDAVLNFMTFLRKLSDL-GK-VII 162 (235)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEE-EEECCCHHHHCCC-------------------HHHHHHHHHHHHHHHHC-CC-EEE
T ss_conf 37789999999755775237789-9953437765264-------------------99999999999998728-97-899
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 3334216764202789998612608987042775
Q gi|254780684|r 311 ISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAE 344 (438)
Q Consensus 311 ~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~ 344 (438)
T Consensus 163 --lTvhp~~l~e~~~~rirs~~d~~l~L~~~~~G 194 (235)
T COG2874 163 --LTVHPSALDEDVLTRIRSACDVYLRLRLEELG 194 (235)
T ss_pred --EEECHHHCCHHHHHHHHHHHHEEEEEEHHHHC
T ss_conf --99473433789999998752025898702317