HHsearch alignment for GI: 254780684 and conserved domain: PRK06002
>PRK06002 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=1009.01 Aligned_cols=437 Identities=57% Similarity=0.951 Sum_probs=424.5
Q ss_pred CHHHHHHHHHHHHHCCCC--EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCC
Q ss_conf 236999999997413342--120128999952589998268888735189995699607999997419979999804855
Q gi|254780684|r 2 QKNLETLAQLAEDYSKNL--VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGE 79 (438)
Q Consensus 2 ~~~l~~l~~~~~~~~~~l--~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~ 79 (438)
T Consensus 4 ~~~~~~l~~~~~~~~a~~p~~r~~G~V~~V~g~i~~v~GL~~~~~~Ge~~~i~~~~~~~~aeVv~~~~~~v~l~p~g~~~ 83 (450)
T PRK06002 4 DNALARLAAFVQQYAAPEPLVRIGGTVSEVTPSHYRVRGLSRFVRLGDRVAIRSDGGTQLGEVVRVDEDGVLVKPFEPRI 83 (450)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEECCCCC
T ss_conf 47999999999850799982345689999938189999886667779889992799717999998637818999876866
Q ss_pred CCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 74678889972885552466688654307763047887775553012112543330001331100111245875200223
Q gi|254780684|r 80 EISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159 (438)
Q Consensus 80 gI~~G~~V~~~g~~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig 159 (438)
T Consensus 84 gi~~G~~V~~tg~l~v~vg~~lLGRVvD~lG~PlDgkgpl~~~~~~~pi~~~~p~~~~R~~i~epL~TGIkaID~l~pig 163 (450)
T PRK06002 84 PAGLGAAVFRKGPLRIRPDPSWKGRVINALGEPIDGKGPLAPGTRPMSIDATAPPAMRRARVDTPLRTGVRVIDIFTPLC 163 (450)
T ss_pred CCCCCCEEEECCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 68899989847980444680004787378886578999988776135156899681212788876631031334214601
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 58503752667889999999987407898389931246522388999986427755328984157788034444445677
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
T Consensus 164 rGQR~gIfgg~GvGKTtLl~~i~~~~~~d~vV~~lIGeRgrEv~ef~e~~l~~~l~~svvV~atsd~~p~~r~~a~~~a~ 243 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAFDTVVVALVGERGREVREFLEDTLADHLSKAVAVVATGDESPMMRRLAPKTAT 243 (450)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48777742689998759999998625898799998647489999999987642200059997058898288765565544
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCC
Q ss_conf 78888642679889997098999999876654047784323663245542004444431136788523554333421676
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDN 319 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd 319 (438)
T Consensus 244 aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~r~gYp~~vf~~l~~LlERag~~~~~~GSITal~~V~~~~dD 323 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDD 323 (450)
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCC
T ss_conf 37999996799679998261788889999998758999756778327766068887622577787306888888713887
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 42027899986126089870427758971311445640002212089999999999999999999999999852344699
Q gi|254780684|r 320 HNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV 399 (438)
Q Consensus 320 ~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~ 399 (438)
T Consensus 324 ~~~pI~d~~~silDGhIvLsr~la~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~g~ 403 (450)
T PRK06002 324 HNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLAKHVWTPEQRKLVRRLKSMIARFEETRDLRLMGGYQPGA 403 (450)
T ss_pred CCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 67757887867735499984889867999972887342017712242999999999999999777789999975946799
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 989999999999999983599888999768999998709
Q gi|254780684|r 400 DLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKLQ 438 (438)
Q Consensus 400 d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~~~~~~~~~l~ 438 (438)
T Consensus 404 d~~~d~ai~~~~~i~~fL~Q~~~ep~s~d~~~~l~~~~~ 442 (450)
T PRK06002 404 DPELDQAVDLVPRIYEALQQSPGDPPSDDPFADLAAALK 442 (450)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999998269999983899899987789999999853