HHsearch alignment for GI: 254780684 and conserved domain: PRK06315

>PRK06315 type III secretion system ATPase; Provisional.
Probab=100.00  E-value=0  Score=988.77  Aligned_cols=432  Identities=37%  Similarity=0.615  Sum_probs=404.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCC
Q ss_conf             923699999999741334212012899995258999826888873518999569-9607999997419979999804855
Q gi|254780684|r    1 MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGE   79 (438)
Q Consensus         1 m~~~l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~   79 (438)
T Consensus         4 ~~~~~~~~~~~~~~~~~--~~~~GrV~~v~G~~ie~~g~--~~~iGelc~I~~~~~~~~~aEVVgf~~~~~~l~p~~~~~   79 (442)
T PRK06315          4 LTTDFDTLMSQLPDVQL--TTVVGRITEVVGMLIKAVVP--DVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELT   79 (442)
T ss_pred             HHHHHHHHHHHHCCCCC--CEEEEEEEEEEEEEEEEEEC--CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCC
T ss_conf             56649999998613886--21357999999789999867--898678689991899778899999849979999877876


Q ss_pred             CCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7467888997288-55524666886543077630478--87775553012112543330001331100111245875200
Q gi|254780684|r   80 EISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDG--DDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFT  156 (438)
Q Consensus        80 gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg--~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~  156 (438)
T Consensus        80 Gi~~G~~V~~~g~~~~vpvg~~lLGRViD~~G~PiDg~~~gp~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~ll  159 (442)
T PRK06315         80 GVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGML  159 (442)
T ss_pred             CCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCCCCEEECCCC
T ss_conf             78999999968998778727151378888887766787778876776311324789693430787875336853001127


Q ss_pred             HHCCCCEEEEECCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHH
Q ss_conf             223585037526678899999999874078-9838993124652238899998642-77553289841577880344444
Q gi|254780684|r  157 PLCHGQRIGVFAGSGIGKSTLLSMFARSDC-FDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMA  234 (438)
Q Consensus       157 pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~-~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a  234 (438)
T Consensus       160 pig~GQR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~lIGeRgrEv~efie~~~~~~~l~rsvvV~atsd~p~~~R~~a  239 (442)
T PRK06315        160 TVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNA  239 (442)
T ss_pred             CCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf             70237776403899998889999999744038934999955113799999997520145213399961799987887555


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf             45677788886426798899970989999998766540477843236632455420044444311367885235543334
Q gi|254780684|r  235 PLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVL  314 (438)
Q Consensus       235 ~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~  314 (438)
T Consensus       240 ~~~A~aiAEyFrd~G~~VLl~~DslTR~A~A~REi~l~~gepP~~~GYppsvf~~l~~l~ERag~--~~~GSITa~~tVl  317 (442)
T PRK06315        240 AYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGA--SDKGTITAFYTVL  317 (442)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCEEEEEEEE
T ss_conf             88777899999868994899943702888899999975589998778683399887888872248--8997456533465


Q ss_pred             ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             21676420278999861260898704277589713114456400022120899999999999999999999999998523
Q gi|254780684|r  315 VDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGG  394 (438)
Q Consensus       315 ~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~  394 (438)
T Consensus       318 ~~gdD~~dPi~d~~~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~  397 (442)
T PRK06315        318 VAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGE  397 (442)
T ss_pred             CCCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             15887678736777876061699858798669999718750453366110579999999999999998899999999629


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCC
Q ss_conf             4469998999999999999998359988899976-8999998709
Q gi|254780684|r  395 YRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKLQ  438 (438)
Q Consensus       395 y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l~  438 (438)
T Consensus       398 y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~i~~  442 (442)
T PRK06315        398 YRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR  442 (442)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             878999889999997999999828998899699999999999759