HHsearch alignment for GI: 254780684 and conserved domain: PRK07960
>PRK07960 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=988.13 Aligned_cols=431 Identities=37% Similarity=0.583 Sum_probs=402.6
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCC----CEEEEEEEECCCEEEEEECC
Q ss_conf 23699999999741-33421201289999525899982688887351899956996----07999997419979999804
Q gi|254780684|r 2 QKNLETLAQLAEDY-SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNS----DNLGQVIRINLDIVYICPVG 76 (438)
Q Consensus 2 ~~~l~~l~~~~~~~-~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~----~v~geVi~~~~~~~~l~~~~ 76 (438)
T Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~GrV~~v~G~~iea~G~--~a~iG~~C~I~~~~g~~~~~v~AEVVGF~~~~~~Lmp~~ 83 (455)
T PRK07960 6 TRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGL--QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLE 83 (455)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECC--CCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEECC
T ss_conf 999999999999983699761466899997359999677--889799899970799877716799998769958996479
Q ss_pred CCCCCCCCCEEEE-------CCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 8557467888997-------288-55524666886543077630478877755530121125433300013311001112
Q gi|254780684|r 77 IGEEISLGDLVFH-------WGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTG 148 (438)
Q Consensus 77 ~~~gI~~G~~V~~-------~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TG 148 (438)
T Consensus 84 ~~~Gi~~G~~V~~~~~~~~~~~~~~~vpVg~~lLGRVvd~lG~PlDg~~~~~~-~~~~pi~~~~pnp~~R~~i~epL~TG 162 (455)
T PRK07960 84 EVEGILPGARVYARNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDT-TETGALITPPFNPLQRTPIEHVLDTG 162 (455)
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf 76657999999724676555788887203846306351899982689999998-76153558997822117878723268
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCC
Q ss_conf 458752002235850375266788999999998740789838993124652238899998642-7755328984157788
Q gi|254780684|r 149 IRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDES 227 (438)
Q Consensus 149 Ir~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~ 227 (438)
T Consensus 163 IraID~llpigrGQRigIfagsGvGKs~Ll~~iar~~~adv~Vi~lIGERgrEv~efi~~~l~~~~~~rsvvv~atsd~~ 242 (455)
T PRK07960 163 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVS 242 (455)
T ss_pred CEEEECCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 44440336714787763248998849999999988608985899720406289999999975147742127998426668
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCE
Q ss_conf 03444444567778888642679889997098999999876654047784323663245542004444431136788523
Q gi|254780684|r 228 PILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNI 307 (438)
Q Consensus 228 ~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSi 307 (438)
T Consensus 243 p~~r~~aa~~a~aiAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~gepP~~~GYppsvf~~l~~L~ERaG~~~~~~GSI 322 (455)
T PRK07960 243 PLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSI 322 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 48888789999999999985587379997364788888888887637998655778306777378998504789998113
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55433342167642027899986126089870427758971311445640002212089999999999999999999999
Q gi|254780684|r 308 TAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 308 T~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~ 387 (438)
T Consensus 323 Ta~~tVl~~gdD~~dPi~d~~~silDGhivLsr~la~~g~yPAIDvl~S~SR~m~~i~~~~h~~~a~~~r~~la~y~~~~ 402 (455)
T PRK07960 323 TAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRTFKQLLSSFQRNR 402 (455)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78889963688867871676454212599982899967999970865047550400079999999999999999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHH
Q ss_conf 99985234469998999999999999998359988899976-8999998
Q gi|254780684|r 388 DIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITK 435 (438)
Q Consensus 388 ~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~ 435 (438)
T Consensus 403 dli~iG~Y~~G~d~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~t~~~L~~ 451 (455)
T PRK07960 403 DLVSVGAYAKGSDPMLDKAIALWPQLEAFLQQGIFERADWEDSLQGLEL 451 (455)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9998618658998679999986899999847998898699999999998