HHsearch alignment for GI: 254780684 and conserved domain: PRK08472
>PRK08472 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=967.85 Aligned_cols=427 Identities=39% Similarity=0.627 Sum_probs=399.9
Q ss_pred HHHHHHHH-HHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEE--CCCCCEEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 99999999-7413342120128999952589998268888735189995--69960799999741997999980485574
Q gi|254780684|r 5 LETLAQLA-EDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQ--GKNSDNLGQVIRINLDIVYICPVGIGEEI 81 (438)
Q Consensus 5 l~~l~~~~-~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~--~~~~~v~geVi~~~~~~~~l~~~~~~~gI 81 (438)
T Consensus 3 ~~~~~~~~~~~~~~--s~~yG~V~~V~G~li~v~G~~--~~iGe~~~I~~~~~g~~~~geVvg~~~~~v~l~~~~~~~Gi 78 (435)
T PRK08472 3 LESLKNKLNQHFSL--SPRFGSITKISANIIEARGLK--PSVGDIVKIVEENDGKECLGMVVVIEKEQFGISPFSFIEGF 78 (435)
T ss_pred HHHHHHHHHHCCCC--CCCCCEEEEEECEEEEEEECC--CCCCCEEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCCC
T ss_conf 68999998735676--677868999957399999458--87678799997699967789999885998999983688789
Q ss_pred CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 67888997288-55524666886543077630478877755530121125433300013311001112458752002235
Q gi|254780684|r 82 SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH 160 (438)
Q Consensus 82 ~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~ 160 (438)
T Consensus 79 ~~G~~V~~tg~~~~vpvg~~lLGRVvD~lG~PlDg~g~i~~~-~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigr 157 (435)
T PRK08472 79 KIGDKVFISDEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYT-EYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGK 157 (435)
T ss_pred CCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf 999999989997378758340278877788645899998876-2301147898804516888741158557743266247
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 85037526678899999999874078983899312465223889999864277553289841577880344444456777
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
T Consensus 158 GQR~gIf~g~GvGKt~Ll~~i~~~~~~dv~V~~lIGeR~rEv~efie~~~~~~l~~tvvvvatsd~p~~~r~~a~~~a~a 237 (435)
T PRK08472 158 GQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLSNTVIVVATSDDSPLMRKYGAFCAMS 237 (435)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 76651235899983357888877615998899761312278999999874113222599984688998999888889999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
T Consensus 238 iAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~~-~~GSIT~i~~v~~~gdD~ 316 (435)
T PRK08472 238 VAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE-GKGSITAFFTVLVEGDDM 316 (435)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCEEEEEEEEECCCCC
T ss_conf 9999986798489984362788999999998658999755638357766578888642588-985148887785048876
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20278999861260898704277589713114456400022120899999999999999999999999998523446999
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD 400 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d 400 (438)
T Consensus 317 ~~pi~d~~~si~DG~ivLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~e~li~ig~y~~g~d 396 (435)
T PRK08472 317 SDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMKDIISPEHNLWARKFKRLYSLLKENEVLIRIGAYQKGSD 396 (435)
T ss_pred CCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77745555454060799978798669999848631454414001369999999999999999898999999648657999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 8999999999999998359988899976-899999870
Q gi|254780684|r 401 LILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 401 ~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
T Consensus 397 ~~~d~ai~~~~~i~~fL~Q~~~e~~~~eet~~~l~~il 434 (435)
T PRK08472 397 KELDEAISKKELMEQFLKQNENELFPFEQSFELLEEIL 434 (435)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89999998479999977999999979999999999973