HHsearch alignment for GI: 254780684 and conserved domain: PRK09354

Probab=96.68  E-value=0.012  Score=38.41  Aligned_cols=108  Identities=19%  Similarity=0.271  Sum_probs=67.4

Q ss_pred             CCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCCHHHHH-HHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             1001112458752002---235850375266788999999-998740-78983899312465223889999864277553
Q gi|254780684|r  142 EKGFKTGIRVIDIFTP---LCHGQRIGVFAGSGIGKSTLL-SMFARS-DCFDKVIISLVGERGREVREFIEDYLGDNLKK  216 (438)
Q Consensus       142 ~e~L~TGIr~ID~l~p---ig~GQR~gIfg~~GvGKt~Ll-~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~l~~  216 (438)
T Consensus        38 v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~--iDaE~ald~~~a~~l---GVd~  112 (350)
T PRK09354         38 VETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAF--IDAEHALDPVYAKKL---GVDI  112 (350)
T ss_pred             CCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE--EEECCCCCHHHHHHC---CCCH
T ss_conf             66544771789998758996787089998898777999999999999975994799--960002798899984---9771


Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf             2898415778803444444567778888642679889997098999
Q gi|254780684|r  217 SVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRF  262 (438)
Q Consensus       217 tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~  262 (438)
T Consensus       113 d~llv~qpd--------~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL  150 (350)
T PRK09354        113 DNLLVSQPD--------TGEQALEIADALVRSGAVDLIVVDSVAAL  150 (350)
T ss_pred             HHEEEECCC--------HHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             571785686--------79999999999985488418998253345